Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0750 ATGGCTGACCCTTACTCTCATCTTTTCTCTCCCCCTCCTTTCTTCCAATTCAACGCTTCCCCTTCTTCTTCTAACCCTTCTTCTCACCACCACCACCACCACCCCTATGCTCTCCACAACTTCTTCAACCACCCCACCGCCTCCTCCTCCGGCGGCCTTTCCCACCACCACCACCACCATGCCGCTACTTATTCTTCTATCCCTTTACCTCCGTCTCCTCCTCTCAGAGAAGCCCTTCCTCTCCTGAGCCTCAGCCCGTCGACGAAGCAAGAGCAAGATCATCATCAAGACTTGGATGTCAAGGTCGACGACGGGATCATCTTCCACAGTGCTAAACCCAAAGAGGAAGAAGAAGACGAAGAGGAGGACGATGAGGCCCCCGTCACTGTTGCACTCCACATAGGGCTGCCCAGCCCTAGTGCTGCTGAGATTGCTTCTGTGCTCTCCTATTGCAACGGTAGAGAACAAGTTGGAGGAGGAGATGGCGGCGGCGGTGACGGCGGAGGAGGTGGAGCTCATGAGGATTTTTGTTCTGGGTCTGGTTTCATGCTCCACAATAAGCTGAACAAGGGACAGTACTGGATCCCTACTCCTTCACAGATTCTCATTGGTCCAACCCAGTTCTCTTGCCCTGTTTGCTTCAAGACCTTCAACAGATACAACAACATGCAGGTCCAGCTTCTTCTTTTGCTCTATCTCTCTTTTCTCAATGTTCCTTATGCCATTTGTACATTGAAGTCCGTGCCTCTCCTGTCTTCATTCTGCAAATCCTGCAGTGTTTCTTCCAGATCCCCGGCATATACTCGTATTAATTATTTTCACTTCAAGCATGTTGCTCTTTCTGACTCTTCCATAATATATCTGGATTCTCAAATCTCAATTATGGGATGGCTTCTTCAACCTCTTATGAAGTATCCACAAATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCAGAATCACTGAGAGGAACACAACCAACGGGAATGCTGAGGCTTCCATGTTATTGTTGCGCACCTGGTTGCAGAAACAACATCGATCACCCAAGAGCGAAGCCGCTAAAGGATTTTAGAACACTTCAAACGCATTACAAGAGGAAGCATGGGATCAAGCCCTTCATGTGCAGAAAATGTGGCAAGGCTTTTGCCGTGAGGGGCGATTGGAGAACTCACGAGAAGAACTGTGGCAAGCTCTGGTATTGTATCTGTGGCTCTGATTTCAAGCACAAGAGGTCTCTTAAGGATCACATCAAAGCCTTTGGGGTTGGCCATGCCGCTTATGGGATCGATGGGTTCGAAGAAGAAGACGACCCTGGGTCCGAAGTGGAGCAAGATAACGAGTCCACCCAGTAA 1359 0.4945 MADPYSHLFSPPPFFQFNASPSSSNPSSHHHHHHPYALHNFFNHPTASSSGGLSHHHHHHAATYSSIPLPPSPPLREALPLLSLSPSTKQEQDHHQDLDVKVDDGIIFHSAKPKEEEEDEEEDDEAPVTVALHIGLPSPSAAEIASVLSYCNGREQVGGGDGGGGDGGGGGAHEDFCSGSGFMLHNKLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQVQLLLLLYLSFLNVPYAICTLKSVPLLSSFCKSCSVSSRSPAYTRINYFHFKHVALSDSSIIYLDSQISIMGWLLQPLMKYPQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGVGHAAYGIDGFEEEDDPGSEVEQDNESTQ 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0750 452 FunFam Zinc finger protein WIP2 344 426 - -
Lele06g0750 452 SUPERFAMILY beta-beta-alpha zinc fingers 357 395 IPR036236 -
Lele06g0750 452 Gene3D Classic Zinc Finger 351 427 - -
Lele06g0750 452 MobiDBLite consensus disorder prediction 47 79 - -
Lele06g0750 452 PANTHER ZINC FINGER PROTEIN WIP2 43 449 IPR043584 GO:0003700|GO:0010468
Lele06g0750 452 ProSiteProfiles Zinc finger C2H2 type domain profile. 375 395 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0750 Lele-ChrLele06 4634629 4636786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0750 307 452 C2H2 Transcription Factor Family AT3G57670 93.289 3.90e-99 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele06g0750 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0750 06 4634629 4636786 Lele06g0750 06 4634629 4636786 ECH
Lele06g0750 06 4634629 4636786 Lele07g0931 07 5569408 5571565 hybridization
Lele06g0750 06 4634629 4636786 Lele08g0749 08 4679608 4681770 hybridization