Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0738 ATGAATCACTTGACTATTGAAACTGGAGATGCTTTTGCAAGCTTGCTTGAGCTTGCAGCTAATAATGATGTTGAGGGTTCTGAAAGACTGATTGAGCGTGATCCATCCTGTGTTGATGAGGTTGGACTATGGTATTGTCGTGGAAAGGGTTCGAAACTAATGGCCAATGAGCAGACAACCCCTTTGATGGTTGCTGCCACTTATGGTAGCATTGGTGTCATGAAGCTGATTCTAACACTATCCAATGCTGACATAAATCGTACTTGTGGCCTCGACAAGAGCACTGCACTTCATTGTGCTGCATCTGGTGGAGCTGCTAATGCGGTTGATGTTGTAAAACTGCTCTTATCAGCAGGTGCTGATCCAAGTTCCGTGGATGCCAATGGTCACCGTCCAATTGATGTTATTGTTGTCCCTCCCAAGCTTGATTATGTCAAAAACAGCCTTGAAGAACTTCTTCAAACAGATGACTCCATGGCAGGGTTTAATCTTAGGGTTAACACGACCAATTCAAAAGCTGAATCTCCACCTTTATCAACTTCACCAGAGAATGAGTCTCCATCATCTTCACCAGATGTCCCCTTGAAGTCAAAGTCAAATGATGCACCTGTTTCTCATGCATCGGAGAAGAAAGAGTATCCTGTCGATCCATCTCTTCCAGACATCAAGAACAGCATATATGCAACTGATGAATTCCGAATGTATTCTTTCAAGGTTCGGCCCTGTTCACGTGCTTATTCCCATGATTGGACTGAATGTCCTTTTGTCCATCCCGGAGAAAATGCCCGAAGAAGGGACCCGAGGAAGTTCCACTATAGCTGTGTTCCTTGTCCTGATTTTCGGAAGGGGGCTTGCCGACGTGGTGATATGTGTCAGTATGCACATGGAGTTTTTGAGTGTTGGCTGCATCCAGCCCAATATCGAACCCGTCTCTGCAAGGATGGGACAAATTGCTCCAGAAGAGTTTGTTTCTTTGCCCATACTGCTGAGGAGCTTCGGCCTTTATATGTTTCAACTGGTTCTGCTGTTCCCTCTCCTCGTTCAAGCACATCTGCCATGGATTTTGCTGCAGCTATGAGCCTGTTTCCTGGCTCCCCTTCCTCTATGTCTGTCATGCCCCCCTCACCATTCACTCCGCCTATGTCTCCATCTGCCAATGGCATGTCACACTCTTCAGCTGCTTGGTCACAAGCCAATGTCCCATGTTTGCATTTGCCAGGGAGTAATCTTCATTGCAGTCATTTGAGATCCTTGCATAATGCTAGAGATATTCCTGTGGAAGACTTGGATTTCTTGCCAGAATTTGAAGTTCAGCAGCAGCAGCTCCTTAATGAGTTGTCTTGTCTTCCTCAACAACCAATGAATTCTAATAGCATGAATCAGTCACTTCGTATAAAGACATTGACCCATTCAAACCTTGATGATCTATTTTCTGCTGAGAACTCTTCCCCTCGATTTGCTGATCCAGCAATGGCCTCAAGTATTTATTCCCCAACGCACAAATCTGCTGCTGTTAATCCATTTCAGCAGCAGCAAAGCTTGCTATCACCTGTGAATACAAAATTTCCTTCCAAGAATGTTGACTATCCTTTATTGCAGACTTCTTTTGCCGTTCAGGCATCAGGAAGGATGTCACCACGCAAAGTGGAACCTATTTCACCGATGAGCCCCAGAATTTCTATGCTAGCTCAACGTGAGAAGCTGCAACAATTCCGTAGCCTTAGCTCTCGGGAACTCGGCTCCAGCTCTGCGGCTGCTCTTGCTGGTTCCTCAATCAATTCTTGGTCCAAATGGGGTTCCCCCAACGGCAAGTTGGATTGGGCTGTCAGTACCGATGATTTGGGCAAATTCCATAGATCGTCTTCATTTGAGCTTGGGAACAACGGCGAGGAGCCTGACTTATCATGGGTGCAGTCTCTAGTCAAAGAATCTCCAGCTGAGATTAAAGAGCCGTCCACTAGTGTCCCAGGCATGGCAGTGGCGGGAACCTCTGGCGAGGAATCAAATATTAGCACTCAAATGGAACCTGTTGATCATGCTGTATTGGGGGCATGGCTTGAACAAATGCAGCTTGATCATCTTGTGGCTCAGCAAAACTGA 2100 0.4614 MNHLTIETGDAFASLLELAANNDVEGSERLIERDPSCVDEVGLWYCRGKGSKLMANEQTTPLMVAATYGSIGVMKLILTLSNADINRTCGLDKSTALHCAASGGAANAVDVVKLLLSAGADPSSVDANGHRPIDVIVVPPKLDYVKNSLEELLQTDDSMAGFNLRVNTTNSKAESPPLSTSPENESPSSSPDVPLKSKSNDAPVSHASEKKEYPVDPSLPDIKNSIYATDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCQYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSAMDFAAAMSLFPGSPSSMSVMPPSPFTPPMSPSANGMSHSSAAWSQANVPCLHLPGSNLHCSHLRSLHNARDIPVEDLDFLPEFEVQQQQLLNELSCLPQQPMNSNSMNQSLRIKTLTHSNLDDLFSAENSSPRFADPAMASSIYSPTHKSAAVNPFQQQQSLLSPVNTKFPSKNVDYPLLQTSFAVQASGRMSPRKVEPISPMSPRISMLAQREKLQQFRSLSSRELGSSSAAALAGSSINSWSKWGSPNGKLDWAVSTDDLGKFHRSSSFELGNNGEEPDLSWVQSLVKESPAEIKEPSTSVPGMAVAGTSGEESNISTQMEPVDHAVLGAWLEQMQLDHLVAQQN 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0738 699 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872
Lele06g0738 699 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 296 IPR000571 GO:0046872
Lele06g0738 699 Gene3D - 11 148 IPR036770 -
Lele06g0738 699 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Lele06g0738 699 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Lele06g0738 699 MobiDBLite consensus disorder prediction 168 196 - -
Lele06g0738 699 SMART ANK_2a 92 124 IPR002110 GO:0005515
Lele06g0738 699 SMART ANK_2a 57 87 IPR002110 GO:0005515
Lele06g0738 699 MobiDBLite consensus disorder prediction 645 671 - -
Lele06g0738 699 MobiDBLite consensus disorder prediction 203 217 - -
Lele06g0738 699 PANTHER UNKEMPT FAMILY MEMBER 17 644 IPR045234 -
Lele06g0738 699 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Lele06g0738 699 FunFam Zinc finger CCCH domain-containing protein 66 229 297 - -
Lele06g0738 699 Pfam Ankyrin repeats (3 copies) 52 124 IPR002110 GO:0005515
Lele06g0738 699 Gene3D - 271 334 - -
Lele06g0738 699 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Lele06g0738 699 SUPERFAMILY Ankyrin repeat 15 138 IPR036770 -
Lele06g0738 699 MobiDBLite consensus disorder prediction 168 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0738 Lele-ChrLele06 4556812 4558911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0738 11 692 C2H2 Transcription Factor Family AT5G12850 52.361 0.0 655
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele06g0738 Ank_2 5e-08 CL0465