LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele06g0735	ATGCGACAAAAATGGGACCCTGCAAACGGTTCTGAATCAGATATATGCAGTAACAAACTACATAATACCTGTTCTCAAGCTTGGTGGGATGGCATAGGGCATGATGCCTTCTCTAAAGAGATGGAAGGGGAAGTCAAAACGAATTCTTTTGTGCCACAACATTTGGATGGTAGTTTTGGAAACCCAATCAGTAATTCACAAGGATCAGTTTTAAGTGAGAAAGAAGGTGGAGAAAAGTATGATGGACATCAACAAAAGCAATTTGCTGTCCGTACTCTGCATTCAACAGTAAATGAATTTCTTGCGCCCCCTAGCCAGTCAGAGCTCGTTGGCCATTCAACAGCATGTGCTTCTTACCCTTATCCAGATCCACATTATGGGGGAGCAATTCCTCCTTATGGACCTCAGCCTTTGTTACATCCTCCTAGTCTCAGAGTGCATTCTTCTAGGATGGTGTTACCACTGCAAATGGAAGAAGAACCTGTGTATGTTAATGCCAAGCAATACCATGGAATTTTGAGGCGTAGGCAATCACGAGCCAAGGCTGAGCTTGAAAAGAAGGTGATAAAAGTGAGGAAGCCGTATCTTCACGAGTCTCGGCATTTGCATGCCTTGAGAAGAGCAAGAGGGTGTGGAGGTCGTTTTCTGACAACAAAGAAGGTTGATAGTACTACTGCAAACACGGCAAACAAGAACCAGGATACTGTTAGTTCAGACCACATAGGCATATCTCCCAATTTATCTGCCATTACTGATTCAGATTCTGGTTCCCGAGAAGTCTTGAAATCCCACCAATCAGGTATGCACTCCAGTTCTAGTGGCAACGATTATTACTCACACTTTCAGGGATTTGAGCTGTCTGGTTATCAACCTCTCTCAAGTGATAGAAGAAACCAAGATTTCTCTGGGGCCCGCAGAGCTCTGACCATTAAATAA	936	0.438	MRQKWDPANGSESDICSNKLHNTCSQAWWDGIGHDAFSKEMEGEVKTNSFVPQHLDGSFGNPISNSQGSVLSEKEGGEKYDGHQQKQFAVRTLHSTVNEFLAPPSQSELVGHSTACASYPYPDPHYGGAIPPYGPQPLLHPPSLRVHSSRMVLPLQMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKVRKPYLHESRHLHALRRARGCGGRFLTTKKVDSTTANTANKNQDTVSSDHIGISPNLSAITDSDSGSREVLKSHQSGMHSSSSGNDYYSHFQGFELSGYQPLSSDRRNQDFSGARRALTIK	311

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele06g0735	311	MobiDBLite	consensus disorder prediction	292	311	-	-
	Lele06g0735	311	PANTHER	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	65	273	IPR001289	GO:0003700\|GO:0006355
	Lele06g0735	311	PRINTS	CCAAT-binding transcription factor subunit B signature	192	215	IPR001289	GO:0003700\|GO:0006355
	Lele06g0735	311	PRINTS	CCAAT-binding transcription factor subunit B signature	161	183	IPR001289	GO:0003700\|GO:0006355
	Lele06g0735	311	MobiDBLite	consensus disorder prediction	226	274	-	-
	Lele06g0735	311	ProSitePatterns	NF-YA/HAP2 subunit signature.	163	183	IPR018362	GO:0003677\|GO:0016602
	Lele06g0735	311	Gene3D	-	158	219	-	-
	Lele06g0735	311	MobiDBLite	consensus disorder prediction	51	77	-	-
	Lele06g0735	311	MobiDBLite	consensus disorder prediction	51	72	-	-
	Lele06g0735	311	SMART	cbf3	157	218	IPR001289	GO:0003700\|GO:0006355
	Lele06g0735	311	Pfam	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	160	215	IPR001289	GO:0003700\|GO:0006355
	Lele06g0735	311	ProSiteProfiles	NF-YA/HAP2 family profile.	158	218	IPR001289	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele06g0735	Lele-ChrLele06	4530194	4533196	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele06g0735	88	223	CCAAT-HAP2 Transcription Factor Family	AT5G12840	55.882	8.05e-45	152

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YA	Lele06g0735		CBFB_NFYA	5.4e-26	No_clan