Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0723 ATGTTTCGAATACGAAACCTTTATTACAGGGCGATCGACGATCAGACTGGGGCGGTATTATATTCTGATTTTGATCCTCCAATGGGTACTCCCGAATTCCCAGATCTTGGAAAGCATTGCGCTGTTGATGATTGCAAATTGATTGATTTCTTGCCCTTCACATGCGATCGTTGCAATCAGGTATTTTGTTTGGAGCACAGAGGTTATATTAAACATCAGTGTCAGAAAGCGGACAAACAAGATGTCGCTGTTGTCATATGTCCACTTTGTGCAAAAGGAGTCCGCCTAATTCCTGATCAAGATCCAAACATAACCTGGGAGAATCATGTCAACACTGAGTGTGACCCATCAAATTATGAGAGAGCCATGAAGAAGAAAAAATGCCCCGCCCCTGGATGCAGAGAGGTCTTGGTGTTCTCAAACACAATCAAATGCAGGGATTGCTTGATAGATCATTGTCTAAAGCATCGTTTTGGCCCTGATCACAAGTGTCCTGGACCCAAAAGTTTGGAAACAAGCTTTACATTTATGAATCTCTTAAGCAGAAGTAGAAAAGAAGAGCCAAATCCAAAGCCAAATCCATCTCCACCAACATCCTCATCAAAATGGGCTTCAGGCTTTCGCAATGTGGCGTCAAATCTCCGAACTTCAGCCGAAGCCAGCATGTCAAAATTGGGTAATGAAATTAACCAATCTTGGCTAACTGCAAAGGATGGGATGGGACAGAGCAGTGGGAGGGGTAATGAAAATGGGCAAGTGGAGATGGAGCAATGTCCTCAGTGTAATGCAAAGTTTTCCTCTGTCACTTCTCTGGTGGATCATGTGCAGAAAGTGCATGAAAGTAGTAGCAACCGATCCAGGGGGGTGGCTAAGGTGACCATCGATGCATGTCCCAAGTGTGGTAGAGGATTTCGAGATCCAGTTGCTCTTGTGGAGCATTCCCTCTTGGCCTCTTCTCCCAACTCTCGATTTCCTTCTTTTCGCACCATCAACGATCGGTATAGTGATCTGTCTTCTCCGTTACAGACTTTCAGGATTAAAAAAATCCAGATTGGGACGCAAGATGTGTTGTATTTGTCATTCGCATGGGAAATACGTAGTAGAAATAGGATATTTCCTGATACTTGTCTCTGCATTCGTGCCAAAAATTTGAACATGGCAGTCAAGTATATCATTCCAGCTATAATAGCATCATTTGGAGTTGCATGGATTTGTGACACATCTGTTTCTGACTCAAAGATGTTTGGAGGCACTACCCCTAATACAGTTTCAAATAAGGATTGGTCGGACGAGACTGACAAAAAGTTTCAGGCATGGCCTCGTACTGCTGGTCCCCCGGTGGTTATGAATCCCATATCTCGCCAAAATTTCATCGTCAAGTCCCGCTCTGATTCTTGA 1398 0.4392 MFRIRNLYYRAIDDQTGAVLYSDFDPPMGTPEFPDLGKHCAVDDCKLIDFLPFTCDRCNQVFCLEHRGYIKHQCQKADKQDVAVVICPLCAKGVRLIPDQDPNITWENHVNTECDPSNYERAMKKKKCPAPGCREVLVFSNTIKCRDCLIDHCLKHRFGPDHKCPGPKSLETSFTFMNLLSRSRKEEPNPKPNPSPPTSSSKWASGFRNVASNLRTSAEASMSKLGNEINQSWLTAKDGMGQSSGRGNENGQVEMEQCPQCNAKFSSVTSLVDHVQKVHESSSNRSRGVAKVTIDACPKCGRGFRDPVALVEHSLLASSPNSRFPSFRTINDRYSDLSSPLQTFRIKKIQIGTQDVLYLSFAWEIRSRNRIFPDTCLCIRAKNLNMAVKYIIPAIIASFGVAWICDTSVSDSKMFGGTTPNTVSNKDWSDETDKKFQAWPRTAGPPVVMNPISRQNFIVKSRSDS 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0723 465 Pfam Protein of unknown function (DUF1138) 389 460 IPR009515 -
Lele06g0723 465 Pfam C2H2-type zinc finger 257 279 - -
Lele06g0723 465 SUPERFAMILY AN1-like Zinc finger 31 79 IPR035896 -
Lele06g0723 465 SUPERFAMILY AN1-like Zinc finger 120 170 IPR035896 -
Lele06g0723 465 Gene3D Classic Zinc Finger 221 315 - -
Lele06g0723 465 Gene3D - 28 92 IPR035896 -
Lele06g0723 465 ProSiteProfiles Zinc finger C2H2 type domain profile. 256 284 IPR013087 -
Lele06g0723 465 MobiDBLite consensus disorder prediction 182 205 - -
Lele06g0723 465 ProSiteProfiles Zinc finger AN1-type profile. 122 172 IPR000058 GO:0008270
Lele06g0723 465 ProSiteProfiles Zinc finger AN1-type profile. 34 82 IPR000058 GO:0008270
Lele06g0723 465 SMART AN1_Zf_4 128 169 IPR000058 GO:0008270
Lele06g0723 465 SMART AN1_Zf_4 40 79 IPR000058 GO:0008270
Lele06g0723 465 ProSitePatterns Zinc finger C2H2 type domain signature. 258 279 IPR013087 -
Lele06g0723 465 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 32 286 - -
Lele06g0723 465 Pfam AN1-like Zinc finger 128 167 IPR000058 GO:0008270
Lele06g0723 465 Pfam AN1-like Zinc finger 40 79 IPR000058 GO:0008270
Lele06g0723 465 Gene3D - 107 176 IPR035896 -
Lele06g0723 465 SMART c2h2final6 256 279 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0723 Lele-ChrLele06 4445897 4452550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0723 28 313 C2H2 Transcription Factor Family AT2G41835 62.500 6.59e-117 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele06g0723 DUF1138 4.2e-40 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0723 06 4445897 4452550 Lele06g0723 06 4445897 4452550 ECH
Lele06g0723 06 4445897 4452550 Lele07g0909 07 5396479 5406418 hybridization
Lele06g0723 06 4445897 4452550 Lele08g0724 08 4495288 4499799 hybridization