Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0697 ATGGATCACAGAAGGCAATCCAAGGACTCGCTCTCCTACTCTAGTCTTTTCAATCTCGAGTCTTTGATGAATTTTCAACTTCCACAACAAGATGATGATTTTGATTATTATGGGAATAGTAGTCAGGATGAGAGCAGAGATACCCAAGGTGGGCCAATCGCAAATCACAGCAATGGGAGTATGCGTGGAAGGGAGGTAAATTTGCTGAAGAAGAGGAAGTGGTCTCAAAACAGTGACGACGAAGACAAGGGTAATTTCTGTGCAATGCACATGACTGAGGAGCGATACCGATCAATGCTTGGGGAACATATTCAAAAATACAAGAGGAGGTATAAAGATACCTCATCTAGTCCTGCCCAAAATCGTGTTAGTGCTCAACTTCTTAAAAGTAACACAGGTTTGAAAGCGTGGAAGTTAGGGAATGAGCACCGAGGAGGAACACATGCTCTGGAGACTACACCTGAGTGGCCTAATGATATTAATCCCCAGAAACCTGCAGAATTCAGACAGCAATATGGACCTGATAGAACTATCTACGAACCGGCTTCTTTAGATATTGGAGATGTTGTTACTTACAAAATTCCTCCTACTTATGATAAGTTAGCAGCAATGCTTAACCTTCCAAGTTTCTCAGATATCCGAGTTGAGGAGTTTTACTTAAAAGGTACCTTGGATTTAGGATCCTTGGCTGCAATGATGGCTTCTGATAAGAGAGGTGGGACTAGAAACCGAGCAGGCATGGGGGAAACCTTACTTCAATACGATTCACTTCAGGCACGATTGAAGGCCATGTCAGCTTCTAATTCACCCCATCAATTTAGTCTGAAAGTATTTGATATTGGTTTGAATACTTCCATCCCAGAGGGAGCTGCTGGAAATATTAAGCGATCTATTTTGTCTGAGGGTGGTGTATTGCATGTTTATTATGTCAAGGTTTTAGAGAAAGGTGACACATATGAGATCATTGAAAGAAGCCTACCTAAGAAGCAAAAGGTAAAGAAAGACCCTTCTTTGATTGAGAAGGAGGAAATGGAAAGAATTGGTAGAGTGTGGGTCCGAATGAAAGTGAGTAGATCACTTAAATTCATGAAGACTGCACCCATTCGCACCCGAAAACTAGCTAGAGATGTCTTGCTGTTCTGGAAACGAGCAGATAAGGAGATGGCAGAACTGAGGAAAAAGGAGGAGAAAGAAGCTGCTGAAGCTTTGAGGCGTGAACAGGAGCTTCGAGAAGCAAAGAGGCAGCAGCAAAGGCTGAATTTCCTTATACAGCAAACTGAGCTATACAGTCACTTTATGCAGAACAAGTTGAACTTACTGTCCTCTGATGCTTTACCTACAGTAGATGAAAAAGCAGATGATCAAGATGCAGAACTTGGCTCTTCAGATGCTGGGCCTAGTGAGGAGGAAGATCCTGAAGATGCTGAACTGAAGAAGGAAGCTATGAAGGCTGCTCAAGAAGCTGTCTCTAAGCAGAGAAAGTTGACGAGTGCTTTTGATAACGAATGCTTGAGGCTGCGTCAGGCTGGTGAAACTGATGCACTTTCACAGGAAGTTGCAGGAGCAAGTAACATTGATTTGCAAACCCCCTCAACCATGCCTGTGGCATCAACAGTTCGGACACCAGAAATGTTTAGAGGCTCTCTTAAAGAATATCAGCTAAAAGGTCTTCAGTGGTTAGTTAATTGTTATGAGCAGGGTCTGAATGGTATACTTGCTGATGAAATGGGACTTGGAAAGACCATTCAAGCCATGGCGTTTTTAGCCCATTTAGCTGAGGAGAAAAATATATGGGGACCGTTTTTGGTTGTTGCACCTGCATCAGTATTGAACAATTGGAATGAAGAACTTGAGCGCTTCTGCCCCGAAATGAAAGCTCTTCCGTACTGGGGTGGGCTTCATGAGCGGACAGTACTTAGGAAAAGTATTAACCCAAAAGATCTTTATCGGAGGGAAAGTGAAATGTTTTATTTTAAATGTCTCGAAATGCTGGTTCTTGATTTGTTGAAGATGAGGAAGATAAGTAGTTGCCATCCCCTATTACATAGTGGGGGAAGCGAAATTTCACATTCTCATTACAAGCTACCAGCTACTAGTATCAGATCAGAAGTATTTTCAGCGTGTGAAATGGCAGTACATGTCTTTTATGATTACATGCTAGAATTGAGAACCATGCAGAACATGGAGCATTCTATTTTAAAGCCTTTCATGCTGCGGCGAGTTAAAAAAGATGTAGTATCCGAACTGACTAAGAAAATAGAGGTTACAGTGCACTGCAAGTTGAGTTCTCGGCAGCAAGCTTTCTATCAAGCAATCAAGAATAAAATATCTCTTGCTGAGTTGTTTGATAGTAATCGTGGGCAGCTCAATGATAAGAGAATTCTGAATTTAATGAATATTGTTATTCAACTAAGAAAGGTTTGCAACCATCCAGAGTTGTTTGAGAGGAGTGAGGGAACCACATTCTATAATTTTGCAGAGATTCCAAATTCCCTTCTGCCTCCTCCATTTGGGGAGTTGGAGGATGTATACTATTCTGGGGGTCACAATCCAATATCATACAAGGTGCCAAAACTTGTCCATCAAGAAATCATGCAAGGTTCTAAATTGCTCAATTCGACAATTGCTTGTGGTGTTAGCAGAGATTTTTTTCAAAGACATTTTAATATTTATAGCCCAGAGAATGTTTTTCAATCTATCTTCTCTGAAGGGAATAAATCAAATGCGTCATTTATTAAAAGTGGAACTTTTGGCTTTACCCATTTGATGGATTTGTCCCCGCAAGAAGTGACGTTTTCAGCTACTGGTTCTTTTATGGAGCAAGTACTGTATTCTATGGTGAGATGGGAACAGAAATTTATCAATGAAGTTGTGGACTTCGTAACAGAGACTGTAGATAATGATCCTGAATACAGTTACCTTGAAAGAGGAAAAGTGAGGGCTGTCACACGAATGTTATTGGTGCCAACAAAATCTGAGACGAAGATTTTTCAAAGAAGATTTGCTACTGGCCCCAGTCATGCCCCTTTTGAGGCATTAGTTGTCCCTTATCAAGATAGGATTATATCCAATGCAAGACTTATTCACTCAGCATACACATATATCCCTCGGACTAGAGCTCCCCCAATTGTTGCCCACTGCTCAAGCCGAAGCTTCTCTTATAAAACACTTGAAGAGTTGCATGACCCTTGGGCTAAGAGATTGCTTGTGGGATTTGCACGTACATCTGAGTTTAATGGACCTAGAAAGCCAGATGGTCCTCCCCATCATTTAATTCAAGAGATTTATTCTGACCTAGAAAGCCAGCCTGCTCTTCAGTTAACCTACAAAATTGTAGGTTCGTCTCCCCCTATGCAAAATTTTGACCCAGCAAAGTTGCTCACTGACTCTGGGAAGCTTCAAACACTTGACATATTATTAAAACGCTTGCGGGCTGAAAATCATCGTGTTCTATTGTTTGCTCAGATGACTAAGATGCTGAATATTCTTGAGGACTACATGAACTACAGAAAATATAGATATTTTAGACTTGATGGATCATCATCTATTCAGGACCGCAGAGACATGGTTAGAGACTTCCAGCAGAGGAATGATGTTTTTGTGTTCTTACTTAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACGGCTGCTGACACAGTAATCTTTTATGAGAATGATTGGAATCCCACATTGGATCAGCAGGCAATGGATAGAGCTCATCGATTGGGTCAAACAAAAGATGTCACTGTTTACAGACTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCTTAGAGCAAGTCAAAAAAGCACTGTACAGAACCTCGTCATGACTGGTGGTGGTTCTGGTGATGATATTTTAGCTCCTGAGGATGTTGTATCTTTGCTTCTGGATGATGTGCAGTTGGAGCAGAAATTCAAGGAAATTCCTCTTCAGGTAAAGGATAAGCAAAAGAGGAAACAAACTGTGAAGGGTATACGGGTAAATGAAGATGGGGATGCGTCTCTGGAAGATCTAACAAACTCTGGAGCGCAGGGTCCAGATAATGATATTTCTCTTGACCCAGAGGGATCAAAGCCCAGTAATAAAAAGCGAGTCACATTTCAAGGGAATATAAACTTGCAGAGAAAACCTGCCTCTGAGAAGCAAACGGCGTCAAGGGCAAGGAATTTTCAAAAGACGAATGAGTTGATGGACTATGAGTTGTATGATGCTACTCAAAATGCTGATCCAGCGGTTCAGAAACACAAGAGACCAAAGAAGGCAAAGAAAGTTGGGAATGACAAGTTTAACGGCTCTTTTACTGGTACCGTCAATATATTCCCAGAGCAGATCCAATAG 4347 0.4132 MDHRRQSKDSLSYSSLFNLESLMNFQLPQQDDDFDYYGNSSQDESRDTQGGPIANHSNGSMRGREVNLLKKRKWSQNSDDEDKGNFCAMHMTEERYRSMLGEHIQKYKRRYKDTSSSPAQNRVSAQLLKSNTGLKAWKLGNEHRGGTHALETTPEWPNDINPQKPAEFRQQYGPDRTIYEPASLDIGDVVTYKIPPTYDKLAAMLNLPSFSDIRVEEFYLKGTLDLGSLAAMMASDKRGGTRNRAGMGETLLQYDSLQARLKAMSASNSPHQFSLKVFDIGLNTSIPEGAAGNIKRSILSEGGVLHVYYVKVLEKGDTYEIIERSLPKKQKVKKDPSLIEKEEMERIGRVWVRMKVSRSLKFMKTAPIRTRKLARDVLLFWKRADKEMAELRKKEEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKLNLLSSDALPTVDEKADDQDAELGSSDAGPSEEEDPEDAELKKEAMKAAQEAVSKQRKLTSAFDNECLRLRQAGETDALSQEVAGASNIDLQTPSTMPVASTVRTPEMFRGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPEMKALPYWGGLHERTVLRKSINPKDLYRRESEMFYFKCLEMLVLDLLKMRKISSCHPLLHSGGSEISHSHYKLPATSIRSEVFSACEMAVHVFYDYMLELRTMQNMEHSILKPFMLRRVKKDVVSELTKKIEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNDKRILNLMNIVIQLRKVCNHPELFERSEGTTFYNFAEIPNSLLPPPFGELEDVYYSGGHNPISYKVPKLVHQEIMQGSKLLNSTIACGVSRDFFQRHFNIYSPENVFQSIFSEGNKSNASFIKSGTFGFTHLMDLSPQEVTFSATGSFMEQVLYSMVRWEQKFINEVVDFVTETVDNDPEYSYLERGKVRAVTRMLLVPTKSETKIFQRRFATGPSHAPFEALVVPYQDRIISNARLIHSAYTYIPRTRAPPIVAHCSSRSFSYKTLEELHDPWAKRLLVGFARTSEFNGPRKPDGPPHHLIQEIYSDLESQPALQLTYKIVGSSPPMQNFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSSIQDRRDMVRDFQQRNDVFVFLLSTRAGGLGINLTAADTVIFYENDWNPTLDQQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGGSGDDILAPEDVVSLLLDDVQLEQKFKEIPLQVKDKQKRKQTVKGIRVNEDGDASLEDLTNSGAQGPDNDISLDPEGSKPSNKKRVTFQGNINLQRKPASEKQTASRARNFQKTNELMDYELYDATQNADPAVQKHKRPKKAKKVGNDKFNGSFTGTVNIFPEQIQ 1448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0697 1448 Gene3D - 750 821 IPR027417 -
Lele06g0697 1448 Pfam Helicase conserved C-terminal domain 1135 1244 IPR001650 -
Lele06g0697 1448 SMART ultradead3 545 739 IPR014001 -
Lele06g0697 1448 Pfam SNF2-related domain 730 814 IPR000330 GO:0005524|GO:0140658
Lele06g0697 1448 Gene3D - 1100 1342 IPR027417 -
Lele06g0697 1448 Pfam SNF2-related domain 564 630 IPR000330 GO:0005524|GO:0140658
Lele06g0697 1448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 533 667 IPR027417 -
Lele06g0697 1448 Pfam DNA-binding domain 320 438 IPR020838 GO:0003677
Lele06g0697 1448 MobiDBLite consensus disorder prediction 30 62 - -
Lele06g0697 1448 PANTHER HELICASE SRCAP-RELATED 352 491 - -
Lele06g0697 1448 MobiDBLite consensus disorder prediction 1319 1336 - -
Lele06g0697 1448 FunFam DNA helicase INO80-like protein 1103 1354 - -
Lele06g0697 1448 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 561 684 IPR014001 -
Lele06g0697 1448 MobiDBLite consensus disorder prediction 1319 1366 - -
Lele06g0697 1448 ProSiteProfiles DBINO domain profile. 313 439 IPR020838 GO:0003677
Lele06g0697 1448 SMART helicmild6 1161 1244 IPR001650 -
Lele06g0697 1448 Coils Coil 386 425 - -
Lele06g0697 1448 MobiDBLite consensus disorder prediction 450 479 - -
Lele06g0697 1448 CDD SF2_C_SNF 1123 1255 - -
Lele06g0697 1448 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1135 1319 IPR001650 -
Lele06g0697 1448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 742 1302 IPR027417 -
Lele06g0697 1448 MobiDBLite consensus disorder prediction 30 63 - -
Lele06g0697 1448 Gene3D - 522 671 IPR038718 -
Lele06g0697 1448 Gene3D - 728 749 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0697 Lele-ChrLele06 4250697 4266000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0697 1122 1264 RAD5 or RAD16-like Gene Family AT5G22750 38.462 1.20e-25 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele06g0697 Helicase_C 3.7e-17 CL0023