Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0686 ATGCTGACGGCACTAGCAAATCCTACCTGCAGGAAATATCGTACACTGCTTCTGAAATCTGATTCTGTTGGAAATTCTGGAAAGGTTATAGCTGCCATTACATATCAAATAGTCCCTGCAGATACAGAGTATGCAGAGATCCCACTTGCAGCGGTTAGTGCAATATATCAACGCAAGGGCCTTGGTCATATGTTGTTTGTAGAACTACGGAAGAGACTTCAACATGTTGGTATTCGTTCAATTTTCTGCTGGGGAGACAAAGAATCTGAAGGATTTTGGCTTGAACAGGGTTTTATATCAATAGCAGAGGTGGACACCAAAGGTAGAGCTCGCAGGTTACCTATAAAAGCTGATATTCGTAAAGCATTATGCTTTCCTGGTGGTTCTACTCTCATGGTTTGCCATCTAAGGAAAGAATTTTCAGCTGATGCTACTAACTCTATGAAGTGTCTTCCCTCACAACATCAGAATCACTTAACATTTGGAAATGCTGAGAACGACCGGCTTAAATTTACAGGACAGTTACACATTGATTTGAACTTTTCAAATAACTCTACTGATAGAACAGATAATATGGAGACTAGTCATCCTAAGGCTCTGGTGAATGATGGCTTTTCAAGAGGATTTGATAAATTGAGCGGACTTGCAAATGACGGAGTTGATGCTGAAATGAAGGATTGTTCTAATTCCTCAAAAGGTCCTAAGAGGACCTGGGAAGCCTCTGTGTCATCATTAAAGTCAAAAAGAGTGAAAGGAAGCCATATAGTTGATGGTGAATCTGAGTCTAGCTGGGGTTTTGTCTCAGAGGTCGATAGGACTAATTCTTGTTTTGTGGGATGCTCATGGGGCGTTTCAAGTGGAAAAAGTTCAGTGGAGCTTCCATGTGGTGATTCTTTGATTATCCAAGAAAAGAATTCTGAGGAACTCAAAGGGGATTATTTACCTTTAGAAGCTCAAGTCAACAATGAACAGCTGTCAACTAAACAATGCTTTAGAATCATGCTGATGAATATTGCTGATGATGATAAGAAAACGCACCTTACAAAGGTAATTGAAGCCCTTGGTGGCACTGTTACATCTGAAGGAAGCATGACCACACATGTTGTCACAGGCAAAGTGAGGAAAACTTTGAATTTCTGCACTGCCATCTGCTCAGGGGCTTGGGTGGTATCATCAGATTGGTTAAAAGAAAGCTATCGTGTAGGCAATTTTGTTGATGAGTTGACTTACATATTAAATGACAAGGATTATCTATTGAAGTACAGATCTGATTTAAAAAGTGCAGTTTTCCGAGCGCAAGCCAACCCCCGAGCTTTGTTCAAGGGGTACAGTGTGTGTATTGCAGATCATGTTCAACCTCCTGCTAAAACACTATCTGCAATTGTGACCTCTGCTGGTGGCAATGTTATTTGTGGGTTGAAGAAAGTAAATGAAGCATCCTCAACCATTTTTGTGACATGTGAAGAAGATATGGAAGAAGCAATGGTAGCTGCAAAGATGGGGATCCGAACTTTCAGTAGTGAGTGGTTTATGAACTGTGTCATGAGACAAGAACTTGATATGGAGGCCTTTAAATTTGCAGAGTCCTTGTGA 1593 0.4074 MLTALANPTCRKYRTLLLKSDSVGNSGKVIAAITYQIVPADTEYAEIPLAAVSAIYQRKGLGHMLFVELRKRLQHVGIRSIFCWGDKESEGFWLEQGFISIAEVDTKGRARRLPIKADIRKALCFPGGSTLMVCHLRKEFSADATNSMKCLPSQHQNHLTFGNAENDRLKFTGQLHIDLNFSNNSTDRTDNMETSHPKALVNDGFSRGFDKLSGLANDGVDAEMKDCSNSSKGPKRTWEASVSSLKSKRVKGSHIVDGESESSWGFVSEVDRTNSCFVGCSWGVSSGKSSVELPCGDSLIIQEKNSEELKGDYLPLEAQVNNEQLSTKQCFRIMLMNIADDDKKTHLTKVIEALGGTVTSEGSMTTHVVTGKVRKTLNFCTAICSGAWVVSSDWLKESYRVGNFVDELTYILNDKDYLLKYRSDLKSAVFRAQANPRALFKGYSVCIADHVQPPAKTLSAIVTSAGGNVICGLKKVNEASSTIFVTCEEDMEEAMVAAKMGIRTFSSEWFMNCVMRQELDMEAFKFAESL 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0686 530 SUPERFAMILY BRCT domain 332 414 IPR036420 -
Lele06g0686 530 Pfam Acetyltransferase (GNAT) family 26 98 IPR000182 GO:0016747
Lele06g0686 530 CDD NAT_SF 25 84 - -
Lele06g0686 530 Gene3D BRCT domain 437 529 IPR036420 -
Lele06g0686 530 SMART BRCT_7 437 517 IPR001357 -
Lele06g0686 530 SMART BRCT_7 325 402 IPR001357 -
Lele06g0686 530 Gene3D BRCT domain 317 436 IPR036420 -
Lele06g0686 530 CDD BRCT_PAXIP1_rpt6_like 439 520 - -
Lele06g0686 530 ProSiteProfiles BRCT domain profile. 435 519 IPR001357 -
Lele06g0686 530 Pfam BRCA1 C Terminus (BRCT) domain 340 398 IPR001357 -
Lele06g0686 530 Gene3D - 8 116 - -
Lele06g0686 530 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 25 163 - -
Lele06g0686 530 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 26 105 IPR016181 -
Lele06g0686 530 ProSiteProfiles BRCT domain profile. 333 412 IPR001357 -
Lele06g0686 530 SUPERFAMILY BRCT domain 431 519 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0686 Lele-ChrLele06 4181419 4186354 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Lele06g0686 Acetyltransf_1 9.4e-05 CL0257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0686 06 4181419 4186354 Lele06g0686 06 4181419 4186354 ECH
Lele06g0686 06 4181419 4186354 Lele07g0876 07 5159061 5164327 hybridization
Lele06g0686 06 4181419 4186354 Lele08g0683 08 4209442 4214672 hybridization