Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0648 ATGCCTTACCTTGTCCGAGAGAAATTGTTCATTGGGGATATCAGTGACGCTGCGCAGATCCTTCAAAATGGTAGCGTCGAAATCACGCATATTTTATCGGTGCTTAGCTCTGCTTCAATATCATTCTTTTCCGAATGGCGAAGTAGCCTAACGATCCCGGCAAAGGAAATTAAGAAGGTATATGTGGGTGGTGGTCATGGTGGTGCTCCTGATAAAGACTTGGGTGATGTGTCAAGGAGTCCGTTGTCACTGGAGAACCTTTTGTACTCGTTGGAATATGCAGGTAAGGATTTGAAGTTGGTCAGGATGGCTGTCCCTCTGAGGGATACAGAAAATGAAAATTTGTTGGATTACTTGGATGTTTGCCTCAATTTTATCGATCGAAGTAGGAAAGATGGTTCTGTTTTGGTGCACTGCTTTGCTGGAGTATCAAGAAGTGCAGCAATTATTACAGCATATCTGATGAGATCCGAACATCTATCTCAAGAAGTTGCCCTCCAATCATTAAGGAAGAGCTGTGAATTTGTTTGCCCCAATGATGGTTTTCTAGAACAGTTAAAAATGTTTGAGGAGATGGGCTTTAAGGTAGATCGCTCTAGCTCTATATACAGGCGCTTTCGTTTGAGAGTACTGGGTGAGAATTATAACTCCGGGGTGAGAATAGACAGTTCTATACTTGGAGCTGATCCTGGAATGCCTGTTAGTGTTGCTTCAGAAGTAGAAGGAGCTCCACATGCAAATAATCGCAGTCCTACATATCGCTGTAAGAAGTGCCGGCGCGTAGTTGCATTGAAGGAACATGTTGTAGACCATGTGCCAGGCGAAGGCGAGACATCCAGTGAATGGCACAAGTGTAGAAGTGACAGCCTCTTTAACAAATACAGTGAATCTGAGTGTTCTTCCATATTTATTGAGCCACTACAATGGATGAAAGCAGTTGAGGAAGGTGCATCGGAGGGGAAGTTGAGCTGTGCCCATTGTGACGCCCGCTTGGGAAACTTCAATTGGTTTGGCATCCAATGCAGCTGCGGAAGCTGGATAACCCCTGCCTTTCAGATCCACAAGTGCAGAGTGGACGCAAGCCCTATCTAA 1092 0.4496 MPYLVREKLFIGDISDAAQILQNGSVEITHILSVLSSASISFFSEWRSSLTIPAKEIKKVYVGGGHGGAPDKDLGDVSRSPLSLENLLYSLEYAGKDLKLVRMAVPLRDTENENLLDYLDVCLNFIDRSRKDGSVLVHCFAGVSRSAAIITAYLMRSEHLSQEVALQSLRKSCEFVCPNDGFLEQLKMFEEMGFKVDRSSSIYRRFRLRVLGENYNSGVRIDSSILGADPGMPVSVASEVEGAPHANNRSPTYRCKKCRRVVALKEHVVDHVPGEGETSSEWHKCRSDSLFNKYSESECSSIFIEPLQWMKAVEEGASEGKLSCAHCDARLGNFNWFGIQCSCGSWITPAFQIHKCRVDASPI 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0648 363 CDD DSP_DUSP12 4 197 - -
Lele06g0648 363 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 116 171 IPR000387 GO:0016311|GO:0016791
Lele06g0648 363 FunFam Dual specificity protein phosphatase 12-like 4 212 - -
Lele06g0648 363 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER 1 360 - -
Lele06g0648 363 ProSitePatterns Tyrosine specific protein phosphatases active site. 137 147 IPR016130 GO:0016311|GO:0016791
Lele06g0648 363 Gene3D Protein tyrosine phosphatase superfamily 4 212 IPR029021 -
Lele06g0648 363 ProSiteProfiles Dual specificity protein phosphatase domain profile. 1 195 IPR020422 GO:0006470|GO:0008138
Lele06g0648 363 PIRSF DUSP12 3 46 IPR016278 GO:0006470|GO:0008138
Lele06g0648 363 PIRSF DUSP12 79 363 IPR016278 GO:0006470|GO:0008138
Lele06g0648 363 Pfam Dual specificity phosphatase, catalytic domain 99 191 IPR000340 GO:0008138|GO:0016311
Lele06g0648 363 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 5 195 IPR029021 -
Lele06g0648 363 SMART dsp_5 1 192 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0648 Lele-ChrLele06 3869654 3872118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0648 100 191 Protein tyrosine phosphatase (PTP) family AT3G06110 37.634 5.86e-15 70.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0648 06 3869654 3872118 Lele06g0648 06 3869654 3872118 ECH
Lele06g0648 06 3869654 3872118 Lele07g0840 07 4830596 4836291 hybridization
Lele06g0648 06 3869654 3872118 Lele08g0646 08 3910948 3922164 hybridization