Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0637 ATGAAGCCCCGGTCCTTAGATTACTGGAGGAGTTACTTTCGAACGGCGAACTCGGATATATTTGATATTATCGACCATGCGATCATGGTGGCCGCTTCTGATTGTCCGAAGGAGTTTCGATTGCGAAGAGATGCAATCGCGGAACGCTTGTTTTCTTGCCGGATGACTCGTTGTTTGGGTTGTGAGCGAGTGGAGTTGGCGGTGTCCGATATTGACGAGGACTACGATGGAGGTTGCAAGAGTGGTTTTGATAGAGACGGAGCTGAAGTGGAAGCAGGTGCAAGTAAAGAGAGCAAGGCCCATAGTAGCAGAGATGACCATGGAGAGATGAACATGAACCACGTTAGCAATTATAGCTACGGAGATGCTGAAGCATTGACGGATGAGATCGAAGAAGAGTCTCAATTGGTTGGGGAGATTTTGCGGATCAAGGAAATTCTTCATAACAGCGAAGAAGAGTCTGAGTCGGAATTATTTGAGTCGTTGAGGAGGCTCCAGCTGATGGAACTGAGTGTGGATCTTCTAAAGGCGACTGAGATTGGAAAGGCTGTCAATCCTTTCCGAAAGCATGGATCAAAGGAGATTCGTCAACTTGCACGAACTCTTATTGATGGCTGGAAAGAAATGGTAGATGAGTGGGTCCATGCTACCACCACAGCCAATGCAGGTTATGAAGGTACCCCAGATTCATTAAATCCTTCTGTTGTTGATGAAGAGGAAGAAGAAGGGCTTCCATCACCTCCTATGGATGAAGGGGCTTTCTTTGCAGCTCAAACTGCGTCAATGGAGTTATCACAGTTCTTCGATGGCATGGATGACGATGCAAATCCTCGACAGAGTGGGGAATTCATCAAGAACCGGGATAATGGCAGAAGATCAGCTCTGGTGAATCAAAACATAGTAAAGAGGAAACAACAGGCTTCCGTTGGGGTGGATGCGATGGTCAAAGACAGCAAGAATCAGCAAGCAAAGAGAAATGAGGCTGTTGCTGAGCTAAATAAAGCAGCAACTGTTGGTTCTGGTCCTGGCAGACCATTGAAATCAAGCATGCAACGAAGAGAGAATATGGAGCCAAGGATGTTGCAAAAGATGGACAGGAGTGGTGTCCCCAAGAGGCCTCTTGCTGATCCGCAGGATAAGTTGAAGAATTCAGATGATGCTTCAGTCCAAATGAAGCTAGAAGCCACTAAGAGGAAACTTCAGGAGAGTTATCAACAAGCTGAAAATGCCAAGAAGCAGCGAACAATCCAGGTTATGGAGTTGCATGATCTCCCCAAGCAAGGAGGGATTAGCCACAGAAACACACATTTCAAACCTGTGAAGAACCAAAACAGGAATTGGGCTCAGGGACGAAGGTAG 1359 0.4665 MKPRSLDYWRSYFRTANSDIFDIIDHAIMVAASDCPKEFRLRRDAIAERLFSCRMTRCLGCERVELAVSDIDEDYDGGCKSGFDRDGAEVEAGASKESKAHSSRDDHGEMNMNHVSNYSYGDAEALTDEIEEESQLVGEILRIKEILHNSEEESESELFESLRRLQLMELSVDLLKATEIGKAVNPFRKHGSKEIRQLARTLIDGWKEMVDEWVHATTTANAGYEGTPDSLNPSVVDEEEEEGLPSPPMDEGAFFAAQTASMELSQFFDGMDDDANPRQSGEFIKNRDNGRRSALVNQNIVKRKQQASVGVDAMVKDSKNQQAKRNEAVAELNKAATVGSGPGRPLKSSMQRRENMEPRMLQKMDRSGVPKRPLADPQDKLKNSDDASVQMKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGGISHRNTHFKPVKNQNRNWAQGRR 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0637 452 ProSiteProfiles TFIIS N-terminal domain profile. 138 213 IPR017923 -
Lele06g0637 452 MobiDBLite consensus disorder prediction 90 112 - -
Lele06g0637 452 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 128 223 IPR035441 -
Lele06g0637 452 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 136 219 IPR035441 -
Lele06g0637 452 SMART TFS2_5 137 212 IPR003617 GO:0005634
Lele06g0637 452 MobiDBLite consensus disorder prediction 220 246 - -
Lele06g0637 452 CDD TFIIS_I 139 211 - -
Lele06g0637 452 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 1 439 IPR044805 -
Lele06g0637 452 MobiDBLite consensus disorder prediction 364 452 - -
Lele06g0637 452 MobiDBLite consensus disorder prediction 364 405 - -
Lele06g0637 452 Coils Coil 390 417 - -
Lele06g0637 452 Pfam TFIIS helical bundle-like domain 162 210 IPR017923 -
Lele06g0637 452 MobiDBLite consensus disorder prediction 90 111 - -
Lele06g0637 452 MobiDBLite consensus disorder prediction 436 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0637 Lele-ChrLele06 3801483 3804119 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lele06g0637 Med26 8.4e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0637 06 3801483 3804119 Lele06g0637 06 3801483 3804119 ECH
Lele06g0637 06 3801483 3804119 Lele07g0832 07 4776107 4778705 hybridization
Lele06g0637 06 3801483 3804119 Lele08g0636 08 3840577 3843208 hybridization