Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0603 ATGGAACAAGAGCCGCTTCTGCCGAGTGATAATCTTCGTCGCACTCGTGGGACTAATCCCATGCTTCGCGCTTCCACCTTGCGCGCCACTTTCACCCTCCCCTTAACTCGCTACACCACCCGTCTGATCGCGGCGGAGCATCACCGGATTTTCCTCGGTGATTGTACGGAGAACCCATCCGAGGACGACGATGACCGACCCCTTGGGGATGGCAGTTGTGCCTATTCGAGGCCCATTTTGGTTCTGGACCTTGTATGGAACCTGGCCTTCGTACTGGTCACTGCTGGTGTACTTCTCTCCACATTTAGCGAGCATCCGTCCACCCCTTTGAGGCTTTGGCTCTGTGGGTATGCCTTTGAGTGTATTCTGCATATGATTTTTGTGTGTTTCGAGTATCGGCGGAGGACTCGAGATTTTTATGGTCCTGAGCTTGGGCTTTCGCTTTCCCAGAGTTGGAACAGCAATGTGAAGAAGTTAGAGTCTATGAACACACTGGTGTCATCTATTTGGTGGGTCCTTGGATTTTATTGGATTGTGGTTGGTGGCCAGCAACTTTTGCAAGACTGTCCTCGTATCTACTGGTTATCAGTGGTCTTTCTGGCCTTTGATGTGTTTTTTATTATCTTTTGCATTGGGATGGTATGTATAGTTTTCTTCGCTCTCTTCTTTTTCATCCCGATAGTAGCATTAGCATATGCTATGAGAATCAGAGAAGGTGCATCAGAAGAGGATATCAGGTGTCTTCCTAAGTATAAGTTTAGTCAGTCAAATTCATTGGTGATGGTTGCCGACAGTAATCAGCAAGTTTCTAAAGCAAGAATGGGTGCAAGCAATAGCAACCTTGCCAGTGAATTATATCTCAACCCAGATGATTCTGAATGCTGCATCTGCCTTTCTCCATACGTTGAGGGGGCAGAACTTTATCGCCTTCCCTGCACACACCATTTTCACTGTGGATGCATCAGCAGATGGCTTCGGACAAAAGCGACCTGCCCTCTCTGCAAATTTAATATTCTTAGAAGTGATACATTGGTTTGA 1038 0.4711 MEQEPLLPSDNLRRTRGTNPMLRASTLRATFTLPLTRYTTRLIAAEHHRIFLGDCTENPSEDDDDRPLGDGSCAYSRPILVLDLVWNLAFVLVTAGVLLSTFSEHPSTPLRLWLCGYAFECILHMIFVCFEYRRRTRDFYGPELGLSLSQSWNSNVKKLESMNTLVSSIWWVLGFYWIVVGGQQLLQDCPRIYWLSVVFLAFDVFFIIFCIGMVCIVFFALFFFIPIVALAYAMRIREGASEEDIRCLPKYKFSQSNSLVMVADSNQQVSKARMGASNSNLASELYLNPDDSECCICLSPYVEGAELYRLPCTHHFHCGCISRWLRTKATCPLCKFNILRSDTLV 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0603 345 Pfam Ring finger domain 293 335 IPR001841 -
Lele06g0603 345 PANTHER TARGET OF ERK KINASE MPK-1 65 339 - -
Lele06g0603 345 ProSiteProfiles Zinc finger RING-type profile. 294 335 IPR001841 -
Lele06g0603 345 SMART ring_2 294 334 IPR001841 -
Lele06g0603 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 342 IPR013083 -
Lele06g0603 345 SUPERFAMILY RING/U-box 286 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0603 Lele-ChrLele06 3613503 3616870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0603 74 342 C3H Transcription Factor Family AT1G68070 45.583 2.06e-88 267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0603 06 3613503 3616870 Lele07g0800 07 4588612 4592224 hybridization
Lele06g0603 06 3613503 3616870 Lele08g0606 08 3662674 3666040 hybridization