Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0561 ATGGAAGATCAAGCTGAGGGCCAACAACAGGATACCAATACTCGGAGCGAGCCGGTGAGGTCAAGGTGGACGCCCAAGCCTGAGCAAATCCTCATCCTTGAATCCATCTTCAACAGTGGCATGGTTAATCCTCCCAAGGAGGAAACCATCCGCATCAGAAAGCTCCTCGAGAAGTTCGGCTCCGTCGGCGACGCTAACGTCTTCTACTGGTTCCAGAACCGCCGCTCCAGATCCCGCCGCCGCCAACGCCAGATGCAGGCCTCCCTCGACCAGCCAAACCAGCTTCAGCCTCAGCCAGGTTTTGCCGGTGCAATTCCTTATGATCATCATCATCAACCTCTCACCACCTCCTCTAATACTTCTGATCCACTTCCTCCTGTTACAACTACCGTGCCTCTTGCCGCCGCTTCTCCGTCTTTCCTTGATCTCTCCGGTTCGTCTTCTTCTTCTTCTGGCATGCTTGCCGGCCAAGAAGCCCTTGACGGTCTTTTCTCGGTGGTCTCTCAAATGGATTTCCCCGAATTTGATCACACTTCTGCTGCTTCTTCAGCTCTATACCCTCCCCCATCTCATGCTTCCTCCTTCAACTATCATTCTGGACTGATCACAGTGTTTATCAATGGAGTAGCAACAGAAGTTCCAAGGGGAGCATTGGACATAAAAACAATGTTTGGGCAAGACGTAGTGTTAGTTCATTCCTCCGGAGTCCCACTTCCTACCAATGACTTTGGTTTCCTGATGCAGAGCTTGCAGCATGGCGAAAGTCTCAAAGCCAACATAATCAAGTATGAACACAAGCAACTAGCAGCAATGGGAGCTTCCTTTTTTGTTTCTCCAAATTAA 843 0.5042 MEDQAEGQQQDTNTRSEPVRSRWTPKPEQILILESIFNSGMVNPPKEETIRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQMQASLDQPNQLQPQPGFAGAIPYDHHHQPLTTSSNTSDPLPPVTTTVPLAAASPSFLDLSGSSSSSSGMLAGQEALDGLFSVVSQMDFPEFDHTSAASSALYPPPSHASSFNYHSGLITVFINGVATEVPRGALDIKTMFGQDVVLVHSSGVPLPTNDFGFLMQSLQHGESLKANIIKYEHKQLAAMGASFFVSPN 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0561 280 MobiDBLite consensus disorder prediction 79 129 - -
Lele06g0561 280 FunFam WUSCHEL-related homeobox 11 20 87 - -
Lele06g0561 280 SMART HOX_1 18 85 IPR001356 GO:0003677
Lele06g0561 280 SUPERFAMILY Homeodomain-like 14 87 IPR009057 -
Lele06g0561 280 PANTHER WUSCHEL-RELATED HOMEOBOX 11 4 255 IPR044558 GO:0003700|GO:0048830
Lele06g0561 280 Gene3D - 18 88 - -
Lele06g0561 280 Pfam Homeodomain 20 80 IPR001356 GO:0003677
Lele06g0561 280 MobiDBLite consensus disorder prediction 111 129 - -
Lele06g0561 280 MobiDBLite consensus disorder prediction 1 26 - -
Lele06g0561 280 ProSiteProfiles 'Homeobox' domain profile. 16 81 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0561 Lele-ChrLele06 3375566 3377305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0561 14 261 Wox Gene Family AT3G03660 49.624 4.25e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lele06g0561 Homeodomain 3e-13 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0561 06 3375566 3377305 Lele06g0561 06 3375566 3377305 ECH
Lele06g0561 06 3375566 3377305 Lele07g0762 07 4336255 4338017 hybridization
Lele06g0561 06 3375566 3377305 Lele08g0567 08 3427426 3428989 hybridization