Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0553 ATGGTGTTCTGTGATCACTGTCAAAGAAATGTAAATGGAATGCGACCGGACGACTCTTCATTATGTTGTGAACGCTGTGGGAAGGTGTTGGAAGATTTGTATTTTTCTCAAGAGGCTACTTTCCTTAAAGATTCATCTGGGCAGAGTAAACTATCTGGTAATCTTGTGAGAACAATTCAAAACGAGTATTCTGCTTCCCGCCAAAGAACATTAGAGAGAGCACTCGATGAGATAAGATACCTTAGCCAAAACCTTGGAGTGGAAGATACCAGTTTGTCCACACAAGCATTGGCCTTTTATAAAATAGCAATTGAACGGAATTTCACAAGGGGACGAAAATCAGAGCAAGTACAGGCTGCTTGTCTCTACATTGCATTCCGGGAAAATGATAAGCCATACCTTCTCATTGATTTTTCAAATTATTCAAGGACAAATGTCTATGTTCTAGGTGCAGTATTTTTACAGCTTTGTAAAGTATTAAGGCTTGAAGAGCACCCAATTGTTCAAAAACCTGTTGATCCTAGTCTTTTTATTTTTAAATATACAAAGAATTTATTAAATCAAAGGAATATGGGTGTCACTGAAACTGCACTGAGCATTGTTGCAAGCATGAAACGTGATTGGATGCAGACAGGGAGGAAGCCTAGTGGCTTATGTGGCGCAGCATTGTACATAGCGGCCCTTGCACATGGTTTTAAATGCTCAAAGTCTGACATCCTAAGAATTGTCCATGTATGTGAAGCAACATTGACCAAGCGTTTGGTTGAGTTTGAGAATACAACCTCTGCAAGCTTGACAGTTGATGAGTTGAATATGATGGCAAAAGAGCGTGAAAAGATTCCGATAGAAAAACCAAATTGTGCATCAGAGGAACACGTCTCACAGGATCTACTGTGTGAACACAAGGATAGTGGTGTCCCACATTATGCCCATGGATTATGTGAAACCTGTTATAAAGATTTTGTTAAACTCTCTGGAGGACTTGATGGTGGTTTGGATCCTCCTGCATTCCAGCGTGCTGAGAGGGACAGAATGACAAAATCACTTCATGAGGAAAGTGGCAACCAGTCAAGTGATTTGGAAAAAGCATCAAATGGGGAGTGTGCAGGCAGGAAAGAAGAGTTACATGCTCCTGGGCCAGAAGAAAGTGTTGTTGGATCTGATGTTGAGCAAATGGCTACTAAATATGGTGGGAATGACGAATCACAGAGAGAAGATATGAGTGCTAAAACTCATAATGAATCAGAAAGTCTCTCTGATATCGATGATTTGGAGGTTGAAGGCTACCTTCACAATGAGGAAGAGAAGCATTACAAGACGCTTATATGGACTGAAATGAATAGGGAGTATCTTGAGGAGCAAGCAGCCAAGGAAGCAGCCGCTGCTGCTGCTAAGGAAGCTTTTGAGGCAAATTTTCAAAACTGTTCTGAGGATATGCTAGCCGCAAAAGAGCTTGCTGAATCTGCTGCAGCAGCTGTGGCCAAATCCAGAAAGGAAAAGAAGCAGAGACGTGCCCAAGAGGCAAAAAATTCAGGTCCTGCTCAATCTGCTGCAGAGGCTACTCGGAAAATGTTGATAAATAAGAGGCTCAGCTCCAAAGTCAATCTTGATCGCTTGGGTAATTTATTTGATGATAATGAGGCTCCGGAGAACAAGAAAGTACGATTTGAGCTGCACTCTGATAAAGATGGTAAATTAGAGCCTGAGCTAGAGGACAAAGACAAAGGAGACGATATGGGATTTGTTGATGAATTTGAGTATGGAGGTTATATGGGCAAGGAAAATAATTCATATGATGAAAAATTGGCGGAATATGACTATGGAGATGATGATTATGGCTATGATGATTACTGA 1854 0.411 MVFCDHCQRNVNGMRPDDSSLCCERCGKVLEDLYFSQEATFLKDSSGQSKLSGNLVRTIQNEYSASRQRTLERALDEIRYLSQNLGVEDTSLSTQALAFYKIAIERNFTRGRKSEQVQAACLYIAFRENDKPYLLIDFSNYSRTNVYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFIFKYTKNLLNQRNMGVTETALSIVASMKRDWMQTGRKPSGLCGAALYIAALAHGFKCSKSDILRIVHVCEATLTKRLVEFENTTSASLTVDELNMMAKEREKIPIEKPNCASEEHVSQDLLCEHKDSGVPHYAHGLCETCYKDFVKLSGGLDGGLDPPAFQRAERDRMTKSLHEESGNQSSDLEKASNGECAGRKEELHAPGPEESVVGSDVEQMATKYGGNDESQREDMSAKTHNESESLSDIDDLEVEGYLHNEEEKHYKTLIWTEMNREYLEEQAAKEAAAAAAKEAFEANFQNCSEDMLAAKELAESAAAAVAKSRKEKKQRRAQEAKNSGPAQSAAEATRKMLINKRLSSKVNLDRLGNLFDDNEAPENKKVRFELHSDKDGKLEPELEDKDKGDDMGFVDEFEYGGYMGKENNSYDEKLAEYDYGDDDYGYDDY 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0553 617 CDD CYCLIN 74 143 IPR013763 -
Lele06g0553 617 Gene3D - 173 267 - -
Lele06g0553 617 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Lele06g0553 617 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Lele06g0553 617 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Lele06g0553 617 Gene3D - 63 165 - -
Lele06g0553 617 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 534 IPR000812 GO:0006352|GO:0070897
Lele06g0553 617 Pfam Brf1-like TBP-binding domain 419 544 IPR011665 -
Lele06g0553 617 MobiDBLite consensus disorder prediction 399 420 - -
Lele06g0553 617 SUPERFAMILY Cyclin-like 172 268 IPR036915 -
Lele06g0553 617 SUPERFAMILY Cyclin-like 73 163 IPR036915 -
Lele06g0553 617 CDD CYCLIN 173 248 IPR013763 -
Lele06g0553 617 MobiDBLite consensus disorder prediction 344 420 - -
Lele06g0553 617 MobiDBLite consensus disorder prediction 556 579 - -
Lele06g0553 617 Coils Coil 491 511 - -
Lele06g0553 617 SMART cyclin_7 76 158 IPR013763 -
Lele06g0553 617 SMART cyclin_7 176 259 IPR013763 -
Lele06g0553 617 Gene3D Single helix bin 410 461 - -
Lele06g0553 617 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Lele06g0553 617 Pfam Transcription factor TFIIB repeat 170 259 IPR013150 GO:0017025
Lele06g0553 617 FunFam Transcription factor IIIB subunit 173 262 - -
Lele06g0553 617 MobiDBLite consensus disorder prediction 494 519 - -
Lele06g0553 617 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
Lele06g0553 617 MobiDBLite consensus disorder prediction 365 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0553 Lele-ChrLele06 3313831 3324102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0553 1 525 Inorganic Solute Cotransporters AT2G01280 41.996 7.79e-116 352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0553 06 3313831 3324102 Lele08g0558 08 3369738 3382004 hybridization