Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0519 ATGAAGCTGAAGAATAGCCTTCCCCCTATCATCTCAAGATCCCATAAACATTTGTCTCTCAGATTCCCACTTTCTCAAGCCTCAATAATGATGGAAATTCAATTCCAGCAGCCAAAGCAGCAACATCAGAGAGCAGGCATTCCAATCAGCAAAGGAGGGAAATTCATAGGAAGAAACAGAAGCCGCAGCAACCCAAACAAGTTTGTAGGGGTTAGGCAGAGGCCCTCAGGGAGATGGGTAGCTGAGATCAAAGACACAACCCAGAAGATAAGAATGTGGCTTGGCACATTTGAGACTGCAGAGGAGGCTGCCAGAGCCTATGATGAAGCTGCTTGCCTTCTTCGAGGAGCCAACACTCGCACCAACTTCATCACCCATGTCTCCTTGGATTCTCCTCTCGCCTCTCGGATTAGAAATCTGCTCAACAACAGAAAATCTGGAACTAAACAACAACAACAAGATCGTGCGGTAGCAGCCTCTGCCCCTACAGGCAGAAGCACCAAAACTAGCACTACTAGTGGTACTAGTATTAGCAGTAGTTCTAGCAATAATACTGAGTTCAACAATGACAGTTCACTTTCTAGTGGGACAATCCAAGATGCCAATCTGTTTGATGATGCTTATAGACCAGATATGAGCAATTGCAAGGAGGAATATGGGTTGGGTTCGACGTCCAATCTCTCATGGGGTGGTTTTGGACCGGTTTATGATCGCTTTTCTTTTGCTCAGGTTTCAGATATTCCTAAGACTGATGGGGAACTGTCTAATATTGCTGACTTAGATCTTTTAGAATTTGAAAGGATGAAAGTTGAGAGGCAAATATCAGCTTCACTCTATGCAATTAATGGAGTGCAAGAGTACATGGAAACTGTTCAGGACTCCAATGAAGCTCTGTGGGATCTTCCACCCTTGTGTTCACTGTTCTGTTAA 930 0.4452 MKLKNSLPPIISRSHKHLSLRFPLSQASIMMEIQFQQPKQQHQRAGIPISKGGKFIGRNRSRSNPNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGANTRTNFITHVSLDSPLASRIRNLLNNRKSGTKQQQQDRAVAASAPTGRSTKTSTTSGTSISSSSSNNTEFNNDSSLSSGTIQDANLFDDAYRPDMSNCKEEYGLGSTSNLSWGGFGPVYDRFSFAQVSDIPKTDGELSNIADLDLLEFERMKVERQISASLYAINGVQEYMETVQDSNEALWDLPPLCSLFC 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0519 309 FunFam ethylene-responsive transcription factor RAP2-11 66 125 - -
Lele06g0519 309 SUPERFAMILY DNA-binding domain 67 124 IPR016177 GO:0003677
Lele06g0519 309 MobiDBLite consensus disorder prediction 143 194 - -
Lele06g0519 309 MobiDBLite consensus disorder prediction 38 64 - -
Lele06g0519 309 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 42 274 - -
Lele06g0519 309 Pfam AP2 domain 67 116 IPR001471 GO:0003700|GO:0006355
Lele06g0519 309 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700|GO:0006355
Lele06g0519 309 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Lele06g0519 309 CDD AP2 67 123 IPR001471 GO:0003700|GO:0006355
Lele06g0519 309 Gene3D AP2/ERF domain 66 125 IPR036955 GO:0003700|GO:0006355
Lele06g0519 309 ProSiteProfiles AP2/ERF domain profile. 67 124 IPR001471 GO:0003700|GO:0006355
Lele06g0519 309 SMART rav1_2 67 130 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0519 Lele-ChrLele06 3132835 3133764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0519 58 309 AP2-EREBP Transcription Factor Family AT5G19790 42.636 7.79e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele06g0519 AP2 7.9e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1343 13 23375283 23376101 Lele06g0519 06 3132835 3133764 CCT
Lele06g0519 06 3132835 3133764 Lele06g0519 06 3132835 3133764 ECH
Lele06g0519 06 3132835 3133764 Lele07g0727 07 4101632 4104152 hybridization
Lele06g0519 06 3132835 3133764 Lele08g0524 08 3180518 3182311 hybridization