Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0469 ATGCAAATAGTGTACCCGCCTTTGGGCCGTGGTCCATATCATCATTCTCTTATAAGTAAACCACGCTTCCTTCGTTTACTACCCCTCCCGCCGCCCAACCAGTCTTCTCCTCTTCAAAAGCTAGGGTTTTGTTTGAGTTTTTCCTGCTCTCCAACTTTTCACAAGATGGTTCTTTCAAATGATATTGATCTATTAAATCCCCCGGCTGAGCTGGAGAAGAGAAAACACAAGCTCAAGCGTCTTGTCCAGTCTCCAAACTCTTTCTTCATGGATGTGAAGTGCCAGGGTTGCTTCAACATAACCACTGTTTTCAGCCACTCTCAGACTGTTGTAGTATGTGGCAACTGCCAAACTGTCTTGTGCCAGCCCACAGGTGGACGGGCCAGGCTAACAGAGGGTTGCTCTTTTAGGAAGAAGGGAGACTAA 426 0.4695 MQIVYPPLGRGPYHHSLISKPRFLRLLPLPPPNQSSPLQKLGFCLSFSCSPTFHKMVLSNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0469 141 Pfam Ribosomal protein S27 85 139 IPR000592 GO:0003735|GO:0005840|GO:0006412
Lele06g0469 141 SUPERFAMILY Zn-binding ribosomal proteins 85 139 IPR011332 GO:0006412
Lele06g0469 141 Hamap 30S ribosomal protein S27e [rps27e]. 79 139 IPR000592 GO:0003735|GO:0005840|GO:0006412
Lele06g0469 141 Gene3D - 60 140 IPR023407 -
Lele06g0469 141 ProSitePatterns Ribosomal protein S27e signature. 93 125 IPR000592 GO:0003735|GO:0005840|GO:0006412
Lele06g0469 141 FunFam 40S ribosomal protein S27 44 141 - -
Lele06g0469 141 PANTHER 40S RIBOSOMAL PROTEIN S27 50 141 IPR000592 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0469 Lele-ChrLele06 2861967 2863090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0469 56 141 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 94.186 3.64e-58 173
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0469 06 2861967 2863090 Lele06g0469 06 2861967 2863090 ECH
Lele06g0469 06 2861967 2863090 Lele07g0678 07 3858372 3859514 hybridization
Lele06g0469 06 2861967 2863090 Lele08g0479 08 2929877 2930844 hybridization