Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0456 ATGCACTTGATTCTTGTACTCTATATGTGGACAAGGCAATCTCCTCGGCATGGGATGGGATTGCGATATACTGATACCGACGAAGCCAACCCCCCCCCCCCCTTTTCTCGTTTTCCAGCCACGATAATAAGCTTATATAACGATAGAAGTTGCGGGAGAGAGCTGAACAAAGTGGATCATCGAAAGCATGGGAAGAGACCTCTACCGTCTGATCACGATGAATCAGAGGCCAATAAAAGAGAAGGTTCCATGTCTCGTCCTCACGCATCACCATCTGATCGGACCCAAAAGGAAGAAACTGCTTCATCACCTTCTTCCTTTCCGTATCTTATCAGCACCAGTACTGATGCTAAAACCTTCTCTGTCCCAATCTCACATGCTCATCAAGTAAGATCCTCTTCTGGGTTGATCCAGAAGCAGGGCCCATCATCCCAGCCGCCATATCAAAATCAAGGCAGCAATAATGTGAGAAGAAGAAACTATAGAGGAGTGAGGCAGAGGCCATGGGGGAAGTGGGCAGCTGAAATCCGAGACCCTAAAAAAGCGGCTAGAGTGTGGCTTGGAACCTTCGAGACGGCCGAGGATGCTGCCGCTGCTTATGATGCTGCAGCATTAAGGTTCAAAGGAAGCAAAGCTAAGCTTAATTTCCCCGAACGTGTCTCTTTAGCTACTTCTTCAGCCATCCCTTCATCACAAACGTCCCAGCCTCAGGCTGCTTATCCTACGCCGCCAACACCGGAGGCGGTACAAACGGTGTCTCAGCCTATAGCTCCATCGATGGACGAGGAAGGGTTCCCGAATCTGTTCCAGTACGCGCAGCTGCTTTGTGGCGGGGATGATGACCTGCAAAGAGCTGCTGCTTCGGGACTTTATAGTTTTCATCAGAATAAGCCATTTCTTCATAATTCTTCTCCGTTATTCTCGTCACCATCAGGAGTGTCTTCTTCATCTGCTTCCATGTCTGGGTCTGATCAACATCAGGTTCAAGATATGCAGAGAGTACAAAAGAGAGATTGTGGTTCTTCTTCTGGTTCTTGTTTTTTTCATGAAAGAAACACGAGGGGATAG 1068 0.4813 MHLILVLYMWTRQSPRHGMGLRYTDTDEANPPPPFSRFPATIISLYNDRSCGRELNKVDHRKHGKRPLPSDHDESEANKREGSMSRPHASPSDRTQKEETASSPSSFPYLISTSTDAKTFSVPISHAHQVRSSSGLIQKQGPSSQPPYQNQGSNNVRRRNYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAAAYDAAALRFKGSKAKLNFPERVSLATSSAIPSSQTSQPQAAYPTPPTPEAVQTVSQPIAPSMDEEGFPNLFQYAQLLCGGDDDLQRAAASGLYSFHQNKPFLHNSSPLFSSPSGVSSSSASMSGSDQHQVQDMQRVQKRDCGSSSGSCFFHERNTRG 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0456 355 PANTHER DNA-BINDING DOMAIN 102 308 IPR044808 GO:0003700|GO:0009873
Lele06g0456 355 MobiDBLite consensus disorder prediction 64 95 - -
Lele06g0456 355 MobiDBLite consensus disorder prediction 55 110 - -
Lele06g0456 355 Gene3D AP2/ERF domain 159 219 IPR036955 GO:0003700|GO:0006355
Lele06g0456 355 MobiDBLite consensus disorder prediction 130 159 - -
Lele06g0456 355 SMART rav1_2 160 223 IPR001471 GO:0003700|GO:0006355
Lele06g0456 355 MobiDBLite consensus disorder prediction 96 110 - -
Lele06g0456 355 MobiDBLite consensus disorder prediction 225 252 - -
Lele06g0456 355 MobiDBLite consensus disorder prediction 304 355 - -
Lele06g0456 355 CDD AP2 160 218 IPR001471 GO:0003700|GO:0006355
Lele06g0456 355 FunFam Ethylene-responsive transcription factor 2 159 218 - -
Lele06g0456 355 SUPERFAMILY DNA-binding domain 160 218 IPR016177 GO:0003677
Lele06g0456 355 ProSiteProfiles AP2/ERF domain profile. 160 217 IPR001471 GO:0003700|GO:0006355
Lele06g0456 355 PRINTS Ethylene responsive element binding protein signature 161 172 IPR001471 GO:0003700|GO:0006355
Lele06g0456 355 PRINTS Ethylene responsive element binding protein signature 183 199 IPR001471 GO:0003700|GO:0006355
Lele06g0456 355 Pfam AP2 domain 160 209 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0456 Lele-ChrLele06 2798782 2800662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0456 140 279 AP2-EREBP Transcription Factor Family AT5G61890 54.930 1.69e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele06g0456 AP2 1.9e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0456 06 2798782 2800662 Lele06g0456 06 2798782 2800662 ECH
Lele05g0636 05 3743641 3744918 Lele06g0456 06 2798782 2800662 ECH
Lele21g1628 21 24240294 24243413 Lele06g0456 06 2798782 2800662 ECH
Lele22g1611 22 21628301 21644118 Lele06g0456 06 2798782 2800662 ECH
Lele23g0383 23 2773051 2774713 Lele06g0456 06 2798782 2800662 ECH
Lele06g0456 06 2798782 2800662 Lele07g0667 07 3802791 3804717 hybridization
Lele06g0456 06 2798782 2800662 Lele08g0469 08 2873322 2874606 hybridization