Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0445 ATGTCTGGTGCTTATTCATTGGAAACTGGAACTTGCTTGTATACGAGGGATCACTTGGGAGAATGGAATTTTATTTATTGGGAGGTGAATCATGTCACATTTTTGCGCACCCTTTTTTATTATATATATATTTTTAGATAGGTCCAACCCAGAGCTACAATGGCGACCAGATACTGGGTAGTCTCTCTCCCCGTTCAAAATTCGGCATCTGCTCTCTGGACTCCATTGCAGGAACAAATCTCCAAGCATTCCTTCGATACTCCTCTTTACAGATTCAATATACCTAATCTCCGGGTTGGAACCCTAGATTCTCTTCTTTCTCTCAGCGATGATCTTGTGAAGGCAAATAGTTTCATGGAAGGAGTGTCACACAAGATCAGGCGACAGATTGAGGAATTGGAGAAAGTTTCGGGCGTTGTGAGCAGCAGTCTGACCGTTGATGGGGTGCCAGTCGATTCATATTTGACCAGGTTTGTTTGGGATGAAGCGAAGTATCCGACTATGTCACCTTTGAAGGAGATTGTGGATGGTATTCACGGTCAAGTGGCAAAGATTGAGGATGATCTGAAGGTTCGTGTTGCTGAGTATAACAATATCCGCAGTCAACTAAATGCTATCAACCGAAAGCAAAGCGGAAGCTTAGCTGTCCGTGATCTTTCCAACCTGGTAAAACCTCAGGATATTATAACTTCAGAACATTTAACTACCCTACTTGCAATTGTTCCTAAGTATTCTCAAAAGGACTGGCTCTCAAGCTATGAGACATTGACAAGTTATGTGGTACCCAGGTCTTCCAAGTTGTTGTATGAGGATAATGAGTATGCTCTTTATACTGTAACACTCTTCACACGTGTTGCAGACAATTTTAGAACTAGTGCACGTGAAAAAGGGTTCCAAATTCGTGATCTTGAGTACAGTCAAGAAACACATGAAGGTCGGAAGCAGGAGCTAGAGAAGTTGGTGCAAGATCAGGAAAGCACAAGAGGAATTCTTTTGCAGTGGTGTTATACCAGTTATGGGGAGGTTTTCAGCTCCTGGATGCACTTTTGTGCTATACGAGTATTTACTGAGAGCATTCTGAGATATGGTTTGCCACCATCTTTCCTGGCAGCGGTCTTAGCTCCGTCTGCAAAAAGTGAGAAAAAAGTACGTTCTATACTTGAAGGCTTGTGTGACAGCGCAAACAGTGCATACTGGAAGACTGAGGATGAAGCTGGGGGTGCTATGACCGGTCTAGCAGGGGATTCTGATGCCCATCCATATGTCTCCTTCACCATCAATCTCGTATGA 1290 0.4341 MSGAYSLETGTCLYTRDHLGEWNFIYWEVNHVTFLRTLFYYIYIFRXVQPRATMATRYWVVSLPVQNSASALWTPLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLVKANSFMEGVSHKIRRQIEELEKVSGVVSSSLTVDGVPVDSYLTRFVWDEAKYPTMSPLKEIVDGIHGQVAKIEDDLKVRVAEYNNIRSQLNAINRKQSGSLAVRDLSNLVKPQDIITSEHLTTLLAIVPKYSQKDWLSSYETLTSYVVPRSSKLLYEDNEYALYTVTLFTRVADNFRTSAREKGFQIRDLEYSQETHEGRKQELEKLVQDQESTRGILLQWCYTSYGEVFSSWMHFCAIRVFTESILRYGLPPSFLAAVLAPSAKSEKKVRSILEGLCDSANSAYWKTEDEAGGAMTGLAGDSDAHPYVSFTINLV 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0445 429 Gene3D Vacuolar atp synthase subunit c; domain 1 60 387 - -
Lele06g0445 429 Gene3D - 94 365 - -
Lele06g0445 429 CDD V-ATPase_C 58 426 IPR004907 GO:0033180|GO:0046961|GO:1902600
Lele06g0445 429 Gene3D - 216 304 - -
Lele06g0445 429 FunFam V-type proton ATPase subunit C 216 304 - -
Lele06g0445 429 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 55 428 IPR004907 GO:0033180|GO:0046961|GO:1902600
Lele06g0445 429 Coils Coil 307 327 - -
Lele06g0445 429 SUPERFAMILY Vacuolar ATP synthase subunit C 54 428 IPR036132 GO:0015078|GO:0033180|GO:1902600
Lele06g0445 429 Pfam V-ATPase subunit C 58 422 IPR004907 GO:0033180|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0445 Lele-ChrLele06 2728089 2732919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0445 54 428 Primary Pumps ATPases(2) AT1G12840 82.400 0.0 652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0445 06 2728089 2732919 Lele06g0445 06 2728089 2732919 ECH
Lele05g0629 05 3714865 3718839 Lele06g0445 06 2728089 2732919 ECH
Lele06g0445 06 2728089 2732919 Lele07g0660 07 3773849 3778165 hybridization
Lele06g0445 06 2728089 2732919 Lele08g0459 08 2801891 2805831 hybridization