Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0407 ATGAGTGTCTTTTGTCCCATTGCTGGTTGTGGAGCACGCTTGACTTCCTTGGAGGAATTCGAGAATCATTATAATGCTCGGCATGCTGCCTCTTGTTCAGGGTGTTCTAGAGTCTACCCGACATCTTGCTTGCTAAGCATACATGTTTCTGAAGTGCATGATTCTTTCTTTCAAGCAAAGGCTGCTAGTGGCTATGATGTGGCAAGTATTTCCAACTTCTATTCATATCTGCAACAGCATCTCATTGACAAGCATAAGTTCCCCACTTCATTTGAGCTTTTGAAGAAGGCTGCTAAACCATCAAAGAAACAAAGGCAGAAGATTCAACGGAAACAAGCTACACACAAGGAGAATGATTCAAGAACAATGGAAGTGGCTAATGCAACCATGGATGGCCTTGTAACGGCAGTCTCTAAATTGAGTACTTCGGACTCAACTCCATCATCTGTCAGCTTCAGTAGCCGGCACACTCGTGGTTTGACATTTGTCCCTAGAGCTGTTCAGCGTGACGTTGGATCAAACTCTGTATCACCTAGGAGAAAGCAGTCAAATAGCCTACAGACCAGTCTGCATACCAACTCTTCCTTGTTATTAGGATCCATGCAGCTTTCTTTTGTAACGAATGTTGAAACTGATTACAGCGCTTACTCGCCTAGCTTGCGTGGAAGGCATTTTCTTCTCGTGCAGCTTCTGCTCGACATTTTGGCTGAAGAAGCGCGGGTTGATGCGGGGTCTCACCTTTTTGAACAAGCTGATCTCACGAGACGAAGGGCTTCACCAGAGAGTTCGTGTGTTGATGCTTTGCCGTTTGCTCTGGTGGGGAAGAACGGCGATGTTATGAGCCAATACATAGAGTTTGTAGCCGACAGGCTGCTGGGAGCTTTGGGATACGGGAAGATATATGATGTTCAGAACCCGTTTGATTGGATGGAGCTGATTCGTTGCAGGAGTTGCATTTCTGCTGCATAA 969 0.4582 MSVFCPIAGCGARLTSLEEFENHYNARHAASCSGCSRVYPTSCLLSIHVSEVHDSFFQAKAASGYDVASISNFYSYLQQHLIDKHKFPTSFELLKKAAKPSKKQRQKIQRKQATHKENDSRTMEVANATMDGLVTAVSKLSTSDSTPSSVSFSSRHTRGLTFVPRAVQRDVGSNSVSPRRKQSNSLQTSLHTNSSLLLGSMQLSFVTNVETDYSAYSPSLRGRHFLLVQLLLDILAEEARVDAGSHLFEQADLTRRRASPESSCVDALPFALVGKNGDVMSQYIEFVADRLLGALGYGKIYDVQNPFDWMELIRCRSCISAA 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0407 322 ProSitePatterns Zinc finger C2H2 type domain signature. 32 53 IPR013087 -
Lele06g0407 322 SMART c2h2final6 3 28 IPR013087 -
Lele06g0407 322 SMART c2h2final6 30 53 IPR013087 -
Lele06g0407 322 SUPERFAMILY Ferritin-like 222 311 IPR009078 -
Lele06g0407 322 MobiDBLite consensus disorder prediction 98 121 - -
Lele06g0407 322 PANTHER UNCHARACTERIZED 2 170 IPR039258 -
Lele06g0407 322 MobiDBLite consensus disorder prediction 170 189 - -
Lele06g0407 322 Gene3D Ribonucleotide Reductase, subunit A 221 311 IPR012348 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0407 Lele-ChrLele06 2484575 2489177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0407 3 177 C2H2 Transcription Factor Family AT5G14140 54.974 3.54e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele06g0407 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0407 06 2484575 2489177 Lele06g0407 06 2484575 2489177 ECH
Lele06g0407 06 2484575 2489177 Lele07g0612 07 3503060 3505109 hybridization
Lele06g0407 06 2484575 2489177 Lele08g0413 08 2533282 2534574 hybridization