Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0400 ATGACTGTGTACTCCCACGAATCAGGCAGCGAAAGAGGAAGAAAAATGGCGGGAGAGGAGCCGCTCAAGCAAAGCACATCTCCATGCCCGTATCCTGCTACTACTTCTCCTTCTCCTCTTCTTCCAGGGAAAAACGATGATCCGAACCAAAAATGCTGGAGGAAGCAAGCGGACGAGAATCTCAAGAGGCTTCACTCTCTTCTCTTCGGGGCCGATCTTGCCCTTCAGAAGGATGATTTTGAGTCGGCGTACATCCTCGGGCTTCGCCTCATCGGCTTTCTTGACTCTCGCTGCCACTCCGATGTCGATGAAGCCTATATACGTCCAATTCGCCGTGAAGTCTTGGGGAAAATCGACACCGCTCGTCGATCCCTCGTTCCAGACTCCGATCGCCAAGCGTTTGAACAAGCAAAAAAGTCTCCAGGGTGTATTTTTGGCAAAACAGGAGATATTGACATTGGGAGAATTAAGAAGTCGAAGTACTTCCAAGCTATATTCAAGGAATCCAAAGAAAAGGGTGATCATCTGGAGAAGCAAGACAAAGCAGGCAGCAAAATGCCAAAAGAATTGTTGCAAACAAAGTTATCATCAATGTATGGGAAAAGTACATTAAGGGCTTACAGTGGTTCCAAATTGAGTTTGAAACATAACAGATCTGAGGACTGCATGATTGTTGAAAAGCCTCTGTCACATGGTGGCCACAGTAAGGGTCATCCTGTCTCTTCTTTCTTGAAAACTGAAGGGGAAGAAAGAACTTCTGGAACTTTGGGAACAAAGCGTGTGCACATGGAAACTAATAGCCCCAAAGTTAGTAATGTGAAGTCACCTTCAAGCAACGGGGAAGCCAAGTCTGATACTTGCGGCAGTGGGTTTGTTACTGCCAGAGCTAAACTGGAAATGGAAGCAAGGCAGAAGCGAGAAGGGATTGGTTCACCCACTGCATCTGCCTCACAATATGATAACAATTCTTTGAATCGGGTATATGGTGGGAGATCATATGGTGTTTCCCGACGTGGCGTCCGTGGTAATTTTGTACCTCCTATTAAATCCAATGGAACTGGCGATGGAAATATGACATCAAGAATTTCTGGAAAGTGTGATGATACTTTAGATGACTCAACAAAGAGATGTTTGGAAGGGCTATGTGGTCCTGACGGAGAGCTTCCCGAGAAATTGAGGAATATAGAACCTCGCCTTATTGAACATGTTAGCAATGAGATTATGGATAGAGATCCTAATGTCCGGTGGGATGACATTGCGGGATTGGAGCATGCCAAGAAATGCGTCACTGAGATGGTCATATGGCCTCTGCTACGTCCTGACATATTTAAGGGATGCCGCTCTCCTGGGCGAGGTCTACTTTTATTTGGTCCACCAGGAACTGGTAAAACAATGATAGGAAAGGCCATAGCAGGGGAGGCAAAGGCAACCTTCTTTTATATATCGGCGAGTTCATTGACAAGCAAGTGGATTGGAGAAGGTGAAAAACTGGTGAGAGCCCTCTTTGGAGTTGCCAGTTGTCGCCAGCCGGCTGTAATATTTGTCGATGAAATAGATTCTCTCCTATCTCAGCGTAAGTCAGAGGGTGAACATGAATCAAGTAGAAGGCTAAAGACACAATTTCTCATTGAAATGGAAGGTTTTGACATTGGTAACGAGCAGGTTCTTCTTATAGGGGCCACCAATCGTCCCCAAGAGCTTGATGAAGCAGCACGAAGGCGACTTACTAAAAGACTTTATATCCCTCTGCCATCGTCAGAGGCAAGAGCCTGGATTGTACGTAACCTCCTAGAGAAGGATGGACTATTAAAGCTTTCAAAGGAAGAGATTGATACCATATGCAACAAAACGGAAGGATATTCGGGATCAGACATGAAAAATTTGGTGAAGGATGCTTCAATGGGTCCCCTAAGAGAGGCTCTAAAGCATGGCATAGAAATTACTAAGTTGAACAAGGAAGATATGCGGCCAGTAGTTCTTCAGGACTTTATGGATGCCCTAAAAGAGGTGAGGCGATCTGTTTCCTCAAATGAACTTGGTGCATACGAAAAATGGAACGAACAATTTGGAAGCCTATCATCAGAAAAGCTCGAGTAA 2097 0.4521 MTVYSHESGSERGRKMAGEEPLKQSTSPCPYPATTSPSPLLPGKNDDPNQKCWRKQADENLKRLHSLLFGADLALQKDDFESAYILGLRLIGFLDSRCHSDVDEAYIRPIRREVLGKIDTARRSLVPDSDRQAFEQAKKSPGCIFGKTGDIDIGRIKKSKYFQAIFKESKEKGDHLEKQDKAGSKMPKELLQTKLSSMYGKSTLRAYSGSKLSLKHNRSEDCMIVEKPLSHGGHSKGHPVSSFLKTEGEERTSGTLGTKRVHMETNSPKVSNVKSPSSNGEAKSDTCGSGFVTARAKLEMEARQKREGIGSPTASASQYDNNSLNRVYGGRSYGVSRRGVRGNFVPPIKSNGTGDGNMTSRISGKCDDTLDDSTKRCLEGLCGPDGELPEKLRNIEPRLIEHVSNEIMDRDPNVRWDDIAGLEHAKKCVTEMVIWPLLRPDIFKGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSEGEHESSRRLKTQFLIEMEGFDIGNEQVLLIGATNRPQELDEAARRRLTKRLYIPLPSSEARAWIVRNLLEKDGLLKLSKEEIDTICNKTEGYSGSDMKNLVKDASMGPLREALKHGIEITKLNKEDMRPVVLQDFMDALKEVRRSVSSNELGAYEKWNEQFGSLSSEKLE 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0400 698 MobiDBLite consensus disorder prediction 228 288 - -
Lele06g0400 698 SMART AAA_5 449 585 IPR003593 -
Lele06g0400 698 Pfam AAA+ lid domain 610 646 IPR041569 -
Lele06g0400 698 Pfam ATPase family associated with various cellular activities (AAA) 453 583 IPR003959 GO:0005524|GO:0016887
Lele06g0400 698 PANTHER AAA DOMAIN-CONTAINING 202 691 - -
Lele06g0400 698 FunFam Fidgetin like 1 584 670 - -
Lele06g0400 698 MobiDBLite consensus disorder prediction 1 51 - -
Lele06g0400 698 MobiDBLite consensus disorder prediction 258 286 - -
Lele06g0400 698 FunFam Fidgetin-like 1 412 594 - -
Lele06g0400 698 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 412 689 IPR027417 -
Lele06g0400 698 Gene3D - 584 670 - -
Lele06g0400 698 ProSitePatterns AAA-protein family signature. 555 574 IPR003960 GO:0005524|GO:0016887
Lele06g0400 698 Gene3D - 412 686 IPR027417 -
Lele06g0400 698 Pfam Vps4 C terminal oligomerisation domain 656 690 IPR015415 -
Lele06g0400 698 CDD AAA 446 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0400 Lele-ChrLele06 2443994 2450325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0400 368 692 Calmodulin-binding Proteins AT3G56690 32.456 1.14e-40 158