Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0239 ATGGGCAAAAACATGGAGTTTCAGAACGCTGTGAGTTTCGTGGTCCATGGATCCATACAGAAAAATCGGGCTTCTCACAAAGCAACAGAACCAGAGGAATTTAACGACGCTGTCTCTCCCGGCCGAAAATGGAAGATCTTCTACAAGTCATCGTCAGCCGTCCCTTCCAAACAATCAAAACCTGAAAAGAAACGGCCCCCGGAAGAATTTCTCTGTCCCATATTAGGGTCTCTCATGGCAGACCCCGTCATCGTCTCCTCTGGCCACACCTTCGAGCGAGTCTCTGTTCAAGCTTGTAAAAATGTAAAGTTCACACCACGCCTCTCCGATGGCTCCACGCCCGATTTTTCTACCGTGATTCCCAACCTTGCCCTTAAATCTGCAATTGCTAAATGGTGCCAGAACTTCGCCAACCTACTCCCCGAGCCACCTGATGTATCTTCTTCTGAGAAGTTCGTGCATAGACTAATGACGATGAAGACCCAGAAGACAGATTCAAGTATCCAGAAAACGCAGAAGGTAGTAATCACAGAGGAAGAGCTGATCCAAGGAATGAAGGAGAATCCACCTGTGAATTTCAATCACGCAGCGACCGAGGTGACTCGACGGCCAGCTCACCCTTACTGGAACTCAGAGGAATCGGCGGGTTCCTCTCCTGCATCTCTGCCTATGCAACTTTCAACTAGACCAAGCTGCTATTCTTCTGCTTCATCCTCAGAAATCGAAGTCATTATTCCTAGCTCACCTGAAGAAGAGAATATCTTGGCCAAGTTCAACAGCTCACAAGTGCCCGAGATAGAAGAAGCCGTTATTTCACTAAGAAAGCTCACGAAAACTAGAGAGGATACGAGGTCCCATATCTGCAGTCCTCGATTACTCTCCGTCCTTCGATCGTTGATCGTGTCCAAGCACACTAATATTCAGGTGAACGCGGTCGCAGCTCTGGTGAACCTCTCATTGGAGAAAGTGAACAAAGTGAGGATACTCCGGTCCGGAATCGTTCCTCCGTTGATTGACGTATTGAAGGGAGGACCCCCTGAGGTGCAGGAACACGCTTCCGGCGCACTCTTCAGCTTGGCCATTCACGACGATAACAAAACTGCAATCGGTGTGCTAGGTGCTCTGCCGCCGTTGCTCCACTTGCTTAAATCCGAGAATGAGCGAACGCGGAATGACTCGGCGCTCGCACTGTACCACCTCTCCCTCGTACAGAGCAACCGGACCAAGATGGTAAGACTCGGGTCGGTTCCGATCCTAATGAGCATGATAAAGTCGGGTAAGATCAGGGGTCACGTGCTACTCATACTATGCAACTTGGCATCTTGTGGAGACGGCCGGGCGGCGATGTTGGATGCGCAGGCGGTGGAGTGCTTGGTGGGGTTGCTAAGCGGTAGCGAGTTGGGTTACGGATCGACCCGGGAGAGCTGCGTGGCTGTGCTGTATGCAATGAGTCACGGAGGGTTGAGGTTTAAAGCGGTGGCAAGGGCGGCGGGGGTGGTGGAGGTGTTGAAGGAGGAGGAGAAGGTGGGAAGCGAGAGGGCGAGGGAGAAGGTGAAGAGGATACTGGAGATGATGAGGGTGAAGGAGGAAGCCGAAGAGGAAGACGTCGACTGGGAGGCGCTTCTTGACTCGGGTTTGAGTAGTCTGAGTCGGGCCTGTCGTGAGTCGAGCGAGTTGTGA 1680 0.5196 MGKNMEFQNAVSFVVHGSIQKNRASHKATEPEEFNDAVSPGRKWKIFYKSSSAVPSKQSKPEKKRPPEEFLCPILGSLMADPVIVSSGHTFERVSVQACKNVKFTPRLSDGSTPDFSTVIPNLALKSAIAKWCQNFANLLPEPPDVSSSEKFVHRLMTMKTQKTDSSIQKTQKVVITEEELIQGMKENPPVNFNHAATEVTRRPAHPYWNSEESAGSSPASLPMQLSTRPSCYSSASSSEIEVIIPSSPEEENILAKFNSSQVPEIEEAVISLRKLTKTREDTRSHICSPRLLSVLRSLIVSKHTNIQVNAVAALVNLSLEKVNKVRILRSGIVPPLIDVLKGGPPEVQEHASGALFSLAIHDDNKTAIGVLGALPPLLHLLKSENERTRNDSALALYHLSLVQSNRTKMVRLGSVPILMSMIKSGKIRGHVLLILCNLASCGDGRAAMLDAQAVECLVGLLSGSELGYGSTRESCVAVLYAMSHGGLRFKAVARAAGVVEVLKEEEKVGSERAREKVKRILEMMRVKEEAEEEDVDWEALLDSGLSSLSRACRESSEL 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0239 559 Pfam Armadillo/beta-catenin-like repeat 363 401 IPR000225 GO:0005515
Lele06g0239 559 Pfam Armadillo/beta-catenin-like repeat 324 360 IPR000225 GO:0005515
Lele06g0239 559 PANTHER U BOX DOMAIN-CONTAINING 49 526 - -
Lele06g0239 559 SUPERFAMILY ARM repeat 253 541 IPR016024 -
Lele06g0239 559 Pfam U-box domain 67 134 IPR003613 GO:0004842|GO:0016567
Lele06g0239 559 FunFam RING-type E3 ubiquitin transferase 47 138 - -
Lele06g0239 559 FunFam RING-type E3 ubiquitin transferase 249 525 - -
Lele06g0239 559 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 139 IPR013083 -
Lele06g0239 559 Coils Coil 514 534 - -
Lele06g0239 559 ProSiteProfiles U-box domain profile. 65 139 IPR003613 GO:0004842|GO:0016567
Lele06g0239 559 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 373 415 IPR000225 GO:0005515
Lele06g0239 559 Gene3D - 250 527 IPR011989 -
Lele06g0239 559 SMART Ubox_2 69 132 IPR003613 GO:0004842|GO:0016567
Lele06g0239 559 SUPERFAMILY RING/U-box 58 142 - -
Lele06g0239 559 SMART arm_5 442 485 IPR000225 GO:0005515
Lele06g0239 559 SMART arm_5 362 402 IPR000225 GO:0005515
Lele06g0239 559 SMART arm_5 403 441 IPR000225 GO:0005515
Lele06g0239 559 SMART arm_5 280 320 IPR000225 GO:0005515
Lele06g0239 559 SMART arm_5 321 361 IPR000225 GO:0005515
Lele06g0239 559 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 332 369 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0239 Lele-ChrLele06 1439731 1441410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0239 61 558 U-box Gene Family AT5G40140 54.563 1.01e-178 513