Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele06g0214 | ATGGCTAGGAGTGTATGCCATTGGAAGAGCAGTAATATGGCATTGGCTCGTTTCAAAGGAAAAATGAGTAGACGTGCAAGCAGAACTGTCTACGTTGGGAATTTGCCGGGTGATATTCGTGAAAGAGAAGTGGAAGATCTGTTTCTCAAGTATGGACACATAACTCACATTGACTTGAAGGTTCCACCCAGACCCCCTGGGTATGCATTTGTAGAGTTTGAGGATGCTCAAGATGCTGAAGATGCAATTCGTGGTCGTGATGGCTATGATTTTGATGGGCATCGGTTAAGGGTAGAGCCTGCACATGGTGGACGTGGTCATTCATCATCCAAGGATCGAAATAGTAGTCACAGTAATGGTCGGGGTGGACGTGGGGTTTCTAGGCGCTCTGAGTACCGAGCACTAGTCACTGGGTTGCCCTCTTCTGCTTCCTGGCAGGATCTTAAAGATCACATGCGGAAAGCAGGAGATGTTTGTTTTTCTCAAGTTTTTCATGATGGTAGAGGAACAACTGGGATTGTTGATTACACAAACCATGATGACATGAAATATGCTATCAAGAAGCTTGACGACTCTGAGTTCCGGAATGCATTTTCCAGAGCTTATGTTCGTGTGAGGGAATATGATTCAAGGCGGGACTCCTCTAGAAGTCCTAGTCGTAGCCGATCTCATTCTAGGGGGCGAAGTTATAGCCGCAGCCGTAGCCGTAGTTACAGTCGAGGGCGTAGTCAGAGCAAATCTCCAAAGGGTAAATCTTCACAGCGTTCTGTTTCACGCTCACGATCTCGCTCGAAGTCAAGGTCCCGTTCTTTGTCAGGATATGGATACTTGGAGCAAACTGGGAATTGGAAATTAGGAACTTGGTGGGATTTGGTTCAATTGCCTGCAACTCAATTTGTTGTGGAGATTGGGAATCAAGGAGATCATGGATTGCTATTTTAG | 942 | 0.4618 | MARSVCHWKSSNMALARFKGKMSRRASRTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSKDRNSSHSNGRGGRGVSRRSEYRALVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNHDDMKYAIKKLDDSEFRNAFSRAYVRVREYDSRRDSSRSPSRSRSHSRGRSYSRSRSRSYSRGRSQSKSPKGKSSQRSVSRSRSRSKSRSRSLSGYGYLEQTGNWKLGTWWDLVQLPATQFVVEIGNQGDHGLLF | 313 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele06g0214 | 313 | Gene3D | - | 16 | 133 | IPR012677 | - | |
| Lele06g0214 | 313 | Gene3D | - | 134 | 209 | IPR012677 | - | |
| Lele06g0214 | 313 | PANTHER | RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN | 16 | 270 | - | - | |
| Lele06g0214 | 313 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 132 | 210 | IPR000504 | GO:0003723 | |
| Lele06g0214 | 313 | MobiDBLite | consensus disorder prediction | 94 | 128 | - | - | |
| Lele06g0214 | 313 | MobiDBLite | consensus disorder prediction | 221 | 235 | - | - | |
| Lele06g0214 | 313 | SUPERFAMILY | RNA-binding domain, RBD | 27 | 198 | IPR035979 | GO:0003676 | |
| Lele06g0214 | 313 | CDD | RRM2_SF2_plant_like | 132 | 207 | - | - | |
| Lele06g0214 | 313 | SMART | rrm1_1 | 29 | 99 | IPR000504 | GO:0003723 | |
| Lele06g0214 | 313 | SMART | rrm1_1 | 133 | 204 | IPR000504 | GO:0003723 | |
| Lele06g0214 | 313 | MobiDBLite | consensus disorder prediction | 236 | 255 | - | - | |
| Lele06g0214 | 313 | CDD | RRM1_SF2_plant_like | 29 | 99 | - | - | |
| Lele06g0214 | 313 | FunFam | serine/arginine-rich splicing factor SR34A-like | 132 | 209 | - | - | |
| Lele06g0214 | 313 | FunFam | ASF/SF2-like pre-mRNA splicing factor SRP31 | 22 | 131 | - | - | |
| Lele06g0214 | 313 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 136 | 196 | IPR000504 | GO:0003723 | |
| Lele06g0214 | 313 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 30 | 97 | IPR000504 | GO:0003723 | |
| Lele06g0214 | 313 | MobiDBLite | consensus disorder prediction | 94 | 130 | - | - | |
| Lele06g0214 | 313 | MobiDBLite | consensus disorder prediction | 207 | 271 | - | - | |
| Lele06g0214 | 313 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 28 | 103 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele06g0214 | Lele-ChrLele06 | 1305175 | 1314264 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele06g0214 | 24 | 194 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 22.599 | 1.10e-06 | 48.1 |