Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0200 ATGGATGGGGATATCGACAGTCGCAATAATAAGTATGCCCATAACGGTAAGGTTCTGCTCGCCTCTGCTATTCTTCTCTTCTTCATGTTTATCCTCATCATCTTCCTTCACACCTACCATTACTCCTGCTTCCGCCGCCGCCGCCCACAACGCCGTCACCGCCACAATCGATCCCTCTTCCTGACTCCCACCGCCAACCCTCACACCGCCCTTGACCCTTGTTTTTTCAAGGTTCTCCCCACCTTCACCTACTCCTCCGCCACTCACCTCCACCTCCAGGAATGTGCCGTGTGCTTGTCGGAGTTCGAGGAAGATGCGGTCGGTCGCGTCCTCCCTAACTGCAATCACTGTTTCCATACCCATTGCATTGATACATGGTTCCGCTCTCACTCCAGCTGCCCAATATGTCGATCTCTGGTTCAGCCGCCAAAAATCTTGCCGCATAAAACAGAGGCGGGTGTTTACGATGGAAAGTTCGCGGGTTGCTCGTATCTTCCTCCGCCGATTTCGTGCCCGAGGAAGGGATTGGATTTAGATGTGCTGAGCGTGATCGTGGAGGCGAGCAAGGAAGAACTGGGGGAGAATACGAGGACTTCGGAGTCGGGGTCACCCGGAGACACCCGACTGAATAGTTCCGGGGATGGACTATGGAAGGGCAGGTGGAGGGAGCGGGCAGCGTAA 681 0.5492 MDGDIDSRNNKYAHNGKVLLASAILLFFMFILIIFLHTYHYSCFRRRRPQRRHRHNRSLFLTPTANPHTALDPCFFKVLPTFTYSSATHLHLQECAVCLSEFEEDAVGRVLPNCNHCFHTHCIDTWFRSHSSCPICRSLVQPPKILPHKTEAGVYDGKFAGCSYLPPPISCPRKGLDLDVLSVIVEASKEELGENTRTSESGSPGDTRLNSSGDGLWKGRWRERAA 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0200 226 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 8 140 IPR044675 -
Lele06g0200 226 Pfam Ring finger domain 94 137 IPR001841 -
Lele06g0200 226 SMART ring_2 95 136 IPR001841 -
Lele06g0200 226 MobiDBLite consensus disorder prediction 190 226 - -
Lele06g0200 226 CDD RING-H2_PA-TM-RING 94 137 - -
Lele06g0200 226 SUPERFAMILY RING/U-box 79 143 - -
Lele06g0200 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 142 IPR013083 -
Lele06g0200 226 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0200 Lele-ChrLele06 1231189 1231869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0200 7 141 Rapid Response to Elicitors AT3G16720 50.340 7.52e-38 132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0200 06 1231189 1231869 Lele07g0399 07 2257294 2257905 hybridization
Lele06g0200 06 1231189 1231869 Lele08g0208 08 1259154 1259843 hybridization