Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0196 ATGAAGTGTTACACAGTGATGAAGAAACGGCATTTGGAAGCTGAAAATCTTATATTATGCATTGAATTTCAGCTGTGAGAATGCGACATCTACGGCACAATAGATTTCATACTTGGAAACGCTGCGGTTGTTCGGCAGAGCTGCAACATATATGCTCGCCTTCCATTACAGGGACAGTTCAATCCAATCTCTGCTCAGGGAAGAACAGACACAAATCAGAACACAGGCATTCCCATCCATAACTTCACCATTAAAGCTGCCGATGACTTAGCTGCGAGTGGTGGCGACGCGAAGACTTATCTTGGAAGGCCGTGGCAACTGTATTCGAGGACAATTATGATGCAGTCGTTCTTGGATAGTGAAATTGATCCTGCAGGGTGGTCTATATGGAGTGGGGATTTCTCACTTGACACTCTGTATTACGCAGAGTTTGATAACAAGGGACCTGAAGTTGATGCTAGCAATAGAGTGACTTATGGTGATGGAGCATCCAACTTTTGTGTTCAATTTGTATAATTTGTTGCTCTTATGCTGGGTATGTTATGGGCCTTTTAA 555 0.4324 MKCYTVMKKRHLEAENLILCIEFQLXECDIYGTIDFILGNAAVVRQSCNIYARLPLQGQFNPISAQGRTDTNQNTGIPIHNFTIKAADDLAASGGDAKTYLGRPWQLYSRTIMMQSFLDSEIDPAGWSIWSGDFSLDTLYYAEFDNKGPEVDASNRVTYGDGASNFCVQFVXFVALMLGMLWAF 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0196 184 SUPERFAMILY Pectin lyase-like 24 160 IPR011050 -
Lele06g0196 184 Gene3D - 22 171 IPR012334 -
Lele06g0196 184 PANTHER PECTINESTERASE 26 159 - -
Lele06g0196 184 Pfam Pectinesterase 26 159 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0196 Lele-ChrLele06 1211593 1214176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0196 27 168 Carbohydrate Esterase AT2G47550 59.060 4.35e-59 191