Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele06g0190 | ATGTGTGGTGGTGCCATTATCGCCGACTTCATACCCCGCCACCGTGGCCGCCGCCTTACCGCCTCTGACATCTGGCCCCAATCTTTCGGTAAGCCAAATGACGACGACTCCGACTTCGACCTCCATTTTCCTCAACCCGATCACTCTCTCTCCCGCAAATCATCACATCCTTCACCAGTCGATAATGAAGCCGAGAAGCCCTTGAAGAGGCAGAGGAAGAACCTCTATCGTGGGATCAGGCAGCGTCCCTGGGGTAAATGGGCTGCGGAGATTCGCGACCCCAGGAAGGGGGTTCGTGTTTGGCTCGGTACCTTCAACACTGCTGAAGAAGCCGCCAGGGCCTATGACAGAGAAGCTCGGAAAATCCGCGGGAAGAAAGCCAAAGTCAATTTTCCCAACGAAGACGACTCCTACTCTCTTCAGACTCGTCGTAATAATCCACCGCCTCCGCTCCGATCCCCAATTTCTCCCCTGTATCCACAGCAGTACGGCTCAAACTTGAACAATGTGCCTAAAAGTTTTGATTTGGAGTTTGGCTATGATCTGAACCAGGCGGGCACAGTTCCTTCCCTTGGATTCGACAACGATCCAACTCTTGTTTCTGTAGATGATAATTCTGTATCTGGTTCCGAGGGCGCCTACCCCACGAAGCAATTCCTGGGCTCGAATCAGAAAGGAAACGGCTATTCCTCTCAGAGTCCAAAGGTGGGCGTGGAAGGAAAAGCGAACGAGGCGGTGATGGAGGCCGAGGAAGAGAAGAACGAGATACAGAAGTTGTCGGAGGAGCTGATGGCTTATGAGAACTACATGAAGTTTTATCAGATTCCATATTATGACGGGCAATCCACGGCGTCCAATAATGCACAGGAAAACGTGGTGGGTGATCTGTGGAGCTTCTACGACGAGGCCGTACCAGCTTCGGTGACGTCATCGGCCTGTGACGGTTTGGTTTTAACCAAGCTGCAACAGAGTGGGGAGGGTGGGAGGAAAATGGTCTCGCTGAAGCTCCAGAAGCGGCTCGCCGCCAGTGTCCTCAAGTGCGGCAGAGGCAAAGTTTGGCTTGATCCAAATGAAGTCACTGAAATATCCATGGCCAATTCTCGCCAAAACATAAGGAAGTTGGTCAAGGATGGTTTCATCATCCGGAAGCCAACCAAGATTCACTCCCGTTCACGTGCCCGTCGAATGAAGGAGGCCAAGAGGAAGGGACGCCACTCCGGATATGGTAAACGTAAGGGTACTAGAGAGGCACGACTTCCTACAAAAATTCTTTGGATGAGGAGAATGCGTGTGCTCAGACGCTTGCTTCGCAAGTACAGGGAATCAAAGAAAATAGACAAGCATATGTACCATGACATGTACATGAAAGTTAAGGGTAATGTGTTCAAGAATAAGAGAGTCCTAATGGAGAGTATCCACAAATCCAAGGCAGAGAAGGCTAGAGAGAAGACTTTGAGTGATCAGTTTGAGGCCAAGCGTGCAAAGAACAAGGCAAGCCGGGAAAGGAAAATGGCAAGGAGGGAGGAGCGATTGGCTCAGGGTCCTGGTGAGAAACCTGCTGCAGCACCGACCGCACCACCTGCGACAGCATCTCAGCCAGCCCAAGCATCAAAAAAATCCAAGAGCTGA | 1629 | 0.5138 | MCGGAIIADFIPRHRGRRLTASDIWPQSFGKPNDDDSDFDLHFPQPDHSLSRKSSHPSPVDNEAEKPLKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDSYSLQTRRNNPPPPLRSPISPLYPQQYGSNLNNVPKSFDLEFGYDLNQAGTVPSLGFDNDPTLVSVDDNSVSGSEGAYPTKQFLGSNQKGNGYSSQSPKVGVEGKANEAVMEAEEEKNEIQKLSEELMAYENYMKFYQIPYYDGQSTASNNAQENVVGDLWSFYDEAVPASVTSSACDGLVLTKLQQSGEGGRKMVSLKLQKRLAASVLKCGRGKVWLDPNEVTEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKMARREERLAQGPGEKPAAAPTAPPATASQPAQASKKSKS | 542 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele06g0190 | 542 | Coils | Coil | 239 | 269 | - | - | |
| Lele06g0190 | 542 | MobiDBLite | consensus disorder prediction | 24 | 75 | - | - | |
| Lele06g0190 | 542 | Hamap | 50S ribosomal protein L19e [rpl19e]. | 333 | 479 | IPR000196 | GO:0003735|GO:0005840|GO:0006412 | |
| Lele06g0190 | 542 | MobiDBLite | consensus disorder prediction | 126 | 166 | - | - | |
| Lele06g0190 | 542 | Gene3D | - | 332 | 386 | IPR015972 | GO:0003735|GO:0005840|GO:0006412 | |
| Lele06g0190 | 542 | CDD | Ribosomal_L19e_E | 334 | 497 | IPR033935 | GO:0003735|GO:0022625 | |
| Lele06g0190 | 542 | Coils | Coil | 491 | 511 | - | - | |
| Lele06g0190 | 542 | ProSitePatterns | Ribosomal protein L19e signature. | 337 | 356 | IPR023638 | - | |
| Lele06g0190 | 542 | ProSiteProfiles | AP2/ERF domain profile. | 75 | 132 | IPR001471 | GO:0003700|GO:0006355 | |
| Lele06g0190 | 542 | SUPERFAMILY | Ribosomal protein L19 (L19e) | 333 | 474 | IPR035970 | GO:0003735|GO:0005840|GO:0006412 | |
| Lele06g0190 | 542 | FunFam | Ribosomal protein L19 | 331 | 386 | - | - | |
| Lele06g0190 | 542 | FunFam | Ribosomal protein L19 | 387 | 521 | - | - | |
| Lele06g0190 | 542 | Gene3D | - | 387 | 518 | - | - | |
| Lele06g0190 | 542 | Pfam | AP2 domain | 76 | 124 | IPR001471 | GO:0003700|GO:0006355 | |
| Lele06g0190 | 542 | MobiDBLite | consensus disorder prediction | 215 | 237 | - | - | |
| Lele06g0190 | 542 | Pfam | Ribosomal protein L19e | 334 | 475 | IPR000196 | GO:0003735|GO:0005840|GO:0006412 | |
| Lele06g0190 | 542 | SUPERFAMILY | DNA-binding domain | 75 | 133 | IPR016177 | GO:0003677 | |
| Lele06g0190 | 542 | CDD | AP2 | 76 | 133 | IPR001471 | GO:0003700|GO:0006355 | |
| Lele06g0190 | 542 | PRINTS | Ethylene responsive element binding protein signature | 76 | 87 | IPR001471 | GO:0003700|GO:0006355 | |
| Lele06g0190 | 542 | PRINTS | Ethylene responsive element binding protein signature | 98 | 114 | IPR001471 | GO:0003700|GO:0006355 | |
| Lele06g0190 | 542 | MobiDBLite | consensus disorder prediction | 387 | 409 | - | - | |
| Lele06g0190 | 542 | FunFam | Ethylene-responsive transcription factor 2 | 74 | 133 | - | - | |
| Lele06g0190 | 542 | SMART | Ribosomal_L19e_2 | 333 | 476 | IPR000196 | GO:0003735|GO:0005840|GO:0006412 | |
| Lele06g0190 | 542 | MobiDBLite | consensus disorder prediction | 474 | 542 | - | - | |
| Lele06g0190 | 542 | PANTHER | 60S RIBOSOMAL PROTEIN L19 | 331 | 518 | IPR039547 | GO:0003723|GO:0003735|GO:0022625 | |
| Lele06g0190 | 542 | MobiDBLite | consensus disorder prediction | 387 | 415 | - | - | |
| Lele06g0190 | 542 | MobiDBLite | consensus disorder prediction | 58 | 72 | - | - | |
| Lele06g0190 | 542 | MobiDBLite | consensus disorder prediction | 33 | 49 | - | - | |
| Lele06g0190 | 542 | MobiDBLite | consensus disorder prediction | 474 | 514 | - | - | |
| Lele06g0190 | 542 | Gene3D | AP2/ERF domain | 75 | 133 | IPR036955 | GO:0003700|GO:0006355 | |
| Lele06g0190 | 542 | MobiDBLite | consensus disorder prediction | 528 | 542 | - | - | |
| Lele06g0190 | 542 | SMART | rav1_2 | 75 | 138 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele06g0190 | Lele-ChrLele06 | 1165465 | 1171217 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele06g0190 | 331 | 541 | Cytoplasmic Ribosomal Protein Gene Family | AT3G16780 | 84.360 | 5.22e-121 | 353 |
Transcription factors information