Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele06g0166 | ATGCTAAAACGAAGTTTCGTTATCCCAGTCCCAAAGAGAGGGGGAGAGAGAAGACAGAGCAACAGAGAGAATTTGAAAAAATATACGAAGCTGTTCCCAGAAACAGAGAGAAGAAGGTGGGAGAAGGATATGGAAGAAGTAGTATTATTGGTTGATGATTTGAAATTACTTTCCGGGATTCCTCGATGCAGAATATGCCATGAAGAAGAATTTGAGAGCTCCGAAAGCCTCGAAGCTCCTTGTGCTTGTTCTGGCACCGTTAAGTTTGCTCACAGATATTGCATTCAGAGATGGTGCAACGAGAAAGGAAACACGACCTGTGAAATATGTCTCCAGGAATATGAACCAGGATATACAGCACCCTCAAAGAAATCTCAGATAAATGACGAGGCTTTGACAATCAGAGATAGCCTGCAAATTCCAAGGGATGAGGAACCGTTAAGTGCAAGATCAGAGGGTAGTGACGAAGGAATCACAACAGAAGGAGATTACTCTGAGCGCACGTCTACTGCGGATAGAAGTGCATCTTGCTGCAGATCACTGGCTTTAACTTTTACACTCATGCTGCTTGTGAGACATCTTTTCGTAGTGCTTACAAATACAGAGGAAGATTACCCATTTTCACTTTTGACTGTGTTTATACTAAAAGCAAGCGGGATCATTCTACCTATGTACATAATCATGTGGGCGATTGGAGGCATATATGGCAATATTCGACGTCACTACCAGGATTCTGACGACGACATATCAATATCCGACAGTGAAGATGAAGAGAGTGAGCTGATGCACGATACCATTGTTCCACATCAATAA | 813 | 0.4256 | MLKRSFVIPVPKRGGERRQSNRENLKKYTKLFPETERRRWEKDMEEVVLLVDDLKLLSGIPRCRICHEEEFESSESLEAPCACSGTVKFAHRYCIQRWCNEKGNTTCEICLQEYEPGYTAPSKKSQINDEALTIRDSLQIPRDEEPLSARSEGSDEGITTEGDYSERTSTADRSASCCRSLALTFTLMLLVRHLFVVLTNTEEDYPFSLLTVFILKASGIILPMYIIMWAIGGIYGNIRRHYQDSDDDISISDSEDEESELMHDTIVPHQ | 270 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele06g0166 | 270 | Pfam | Protein of unknown function (DUF3675) | 116 | 231 | IPR022143 | - | |
Lele06g0166 | 270 | MobiDBLite | consensus disorder prediction | 143 | 167 | - | - | |
Lele06g0166 | 270 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 57 | 122 | IPR013083 | - | |
Lele06g0166 | 270 | SUPERFAMILY | RING/U-box | 62 | 115 | - | - | |
Lele06g0166 | 270 | SMART | ringv_2 | 62 | 111 | IPR011016 | GO:0008270 | |
Lele06g0166 | 270 | CDD | RING_CH-C4HC3_MARCH | 63 | 110 | - | - | |
Lele06g0166 | 270 | FunFam | E3 ubiquitin-protein ligase MARCH4 | 52 | 120 | - | - | |
Lele06g0166 | 270 | Pfam | RING-variant domain | 63 | 110 | IPR011016 | GO:0008270 | |
Lele06g0166 | 270 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 55 | 117 | IPR011016 | GO:0008270 | |
Lele06g0166 | 270 | PANTHER | RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING | 61 | 241 | IPR033275 | - | |
Lele06g0166 | 270 | MobiDBLite | consensus disorder prediction | 246 | 270 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele06g0166 | Lele-ChrLele06 | 1011636 | 1014189 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele06g0166 | 63 | 110 | C3H Transcription Factor Family | AT5G05830 | 38.462 | 1.33e-06 | 46.2 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lele13g2127 | 13 | 28053595 | 28056587 | Lele06g0166 | 06 | 1011636 | 1014189 | CCT | |
Lele14g2051 | 14 | 26385519 | 26388638 | Lele06g0166 | 06 | 1011636 | 1014189 | CCT | |
Lele15g0284 | 15 | 1611901 | 1614906 | Lele06g0166 | 06 | 1011636 | 1014189 | CCT | |
Lele16g0299 | 16 | 1657363 | 1660486 | Lele06g0166 | 06 | 1011636 | 1014189 | CCT | |
Lele06g0166 | 06 | 1011636 | 1014189 | Lele06g0166 | 06 | 1011636 | 1014189 | ECH | |
Lele06g0166 | 06 | 1011636 | 1014189 | Lele07g0366 | 07 | 2049907 | 2054404 | hybridization |