Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0166 ATGCTAAAACGAAGTTTCGTTATCCCAGTCCCAAAGAGAGGGGGAGAGAGAAGACAGAGCAACAGAGAGAATTTGAAAAAATATACGAAGCTGTTCCCAGAAACAGAGAGAAGAAGGTGGGAGAAGGATATGGAAGAAGTAGTATTATTGGTTGATGATTTGAAATTACTTTCCGGGATTCCTCGATGCAGAATATGCCATGAAGAAGAATTTGAGAGCTCCGAAAGCCTCGAAGCTCCTTGTGCTTGTTCTGGCACCGTTAAGTTTGCTCACAGATATTGCATTCAGAGATGGTGCAACGAGAAAGGAAACACGACCTGTGAAATATGTCTCCAGGAATATGAACCAGGATATACAGCACCCTCAAAGAAATCTCAGATAAATGACGAGGCTTTGACAATCAGAGATAGCCTGCAAATTCCAAGGGATGAGGAACCGTTAAGTGCAAGATCAGAGGGTAGTGACGAAGGAATCACAACAGAAGGAGATTACTCTGAGCGCACGTCTACTGCGGATAGAAGTGCATCTTGCTGCAGATCACTGGCTTTAACTTTTACACTCATGCTGCTTGTGAGACATCTTTTCGTAGTGCTTACAAATACAGAGGAAGATTACCCATTTTCACTTTTGACTGTGTTTATACTAAAAGCAAGCGGGATCATTCTACCTATGTACATAATCATGTGGGCGATTGGAGGCATATATGGCAATATTCGACGTCACTACCAGGATTCTGACGACGACATATCAATATCCGACAGTGAAGATGAAGAGAGTGAGCTGATGCACGATACCATTGTTCCACATCAATAA 813 0.4256 MLKRSFVIPVPKRGGERRQSNRENLKKYTKLFPETERRRWEKDMEEVVLLVDDLKLLSGIPRCRICHEEEFESSESLEAPCACSGTVKFAHRYCIQRWCNEKGNTTCEICLQEYEPGYTAPSKKSQINDEALTIRDSLQIPRDEEPLSARSEGSDEGITTEGDYSERTSTADRSASCCRSLALTFTLMLLVRHLFVVLTNTEEDYPFSLLTVFILKASGIILPMYIIMWAIGGIYGNIRRHYQDSDDDISISDSEDEESELMHDTIVPHQ 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0166 270 Pfam Protein of unknown function (DUF3675) 116 231 IPR022143 -
Lele06g0166 270 MobiDBLite consensus disorder prediction 143 167 - -
Lele06g0166 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 122 IPR013083 -
Lele06g0166 270 SUPERFAMILY RING/U-box 62 115 - -
Lele06g0166 270 SMART ringv_2 62 111 IPR011016 GO:0008270
Lele06g0166 270 CDD RING_CH-C4HC3_MARCH 63 110 - -
Lele06g0166 270 FunFam E3 ubiquitin-protein ligase MARCH4 52 120 - -
Lele06g0166 270 Pfam RING-variant domain 63 110 IPR011016 GO:0008270
Lele06g0166 270 ProSiteProfiles Zinc finger RING-CH-type profile. 55 117 IPR011016 GO:0008270
Lele06g0166 270 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 61 241 IPR033275 -
Lele06g0166 270 MobiDBLite consensus disorder prediction 246 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0166 Lele-ChrLele06 1011636 1014189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0166 63 110 C3H Transcription Factor Family AT5G05830 38.462 1.33e-06 46.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2127 13 28053595 28056587 Lele06g0166 06 1011636 1014189 CCT
Lele14g2051 14 26385519 26388638 Lele06g0166 06 1011636 1014189 CCT
Lele15g0284 15 1611901 1614906 Lele06g0166 06 1011636 1014189 CCT
Lele16g0299 16 1657363 1660486 Lele06g0166 06 1011636 1014189 CCT
Lele06g0166 06 1011636 1014189 Lele06g0166 06 1011636 1014189 ECH
Lele06g0166 06 1011636 1014189 Lele07g0366 07 2049907 2054404 hybridization