Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0153 ATGTCGAAGCGGAAGTTCGGGTTCGAAGGATTTGGCATCAACCGCCAATCGACCTATAATTTTGAGAGATCTCAAGCTCCTCAGCGACTGTATGTTCCTCCTTCATCACGTCACGGGCATGACAATTACGAGGACACTGACCTTGACAACATCGAATATGACGATAATGATGCTCCCAAAGATGGAAACAATGGCAACAGCGACGATATTGATCCCCTTGATGCTTTCATGGAAGGGATTCACGAGGAAATGAAAGCCGCGCCGCCTCCGCTGCCGAAAGAGAAGGCAGAGGACAGGTATAGAGATGACGATGAGGACGACCCGATGGAGAGTTTCTTGAGGGCGAAGAAGGACGTAGGGTTGACCCTGGCGTCCGATGCTCTGCACGCTGGATATGACTCGGATGAGGAGGTTTATGCAGCTGCGAAAGCTGTAGACGCGGGAATGATAGATTATGACTCTGACGACAACCCCATTCTTGTCGACAAGAAGAAAATTGAGCCTATTCCTGCCCTGGACCACAGTTCCATTGAGTACGAGCCATTTAACAAGGATTTTTACGAGGAGAAACCTTCAATATCAGATATGAGCGAGCAAGATGTTGCTGAATACAGGAAGAGTTTGGCCATTCGTATATCAGGTTTTGATGTTCCGAAGCCAATTAAGACATTTGAAGAGTGTGGTTTCTCTCCACAACTTATGAATGCCATAAAGAAGCAAGGCTATGAGAAGCCAACATCAATACAACGCCAAGCTTCACCAGTTGTGCTCTCTGGCAGAGATATAATAGGTATAGCAAAAACTGGTTCTGGTAAAACTGCTGCCTTTGTCCTTCCTATGATTGTTCATATAATGGATCAGCCTGAACTTCAGAAGGAAGAAGGGCCCATAGGAGTTATCTGTGCTCCAACTAGAGAACTGGCACATCAGATATACTTGGAGGCGAAGAAATTTGCAAAACCGTATGGGTTACGCGTCTCTGCTGTCTATGGTGGAATGTCAAAACTGGATCAGTTCAAAGAAATCAAGGCAGGCTGTGAGATAGTTGTTGCTACCCCTGGTAGATTAATAGACTTGCTGAAAATGAAGGCACTTACAATGATGAGAGCTACGTACTTGGTGCTTGATGAGGCTGATCGGATGTTTGACCTTGGATTTGAGCCACAAGTAAGGTCCATCGTTGGTCAGATCAGGCCTGATCGCCAAACTTTACTTTTTTCTGCAACAATGCCCCGTAGAGTTGAGAAGTTGGCCAGGGAAATTCTTAGTGATCCTGTTAGAGTGACAGTTGGGGAGATTGGAATGGCAAATGAAGACATTACTCAAGTTGTTCAAGTGATTTCCTCGGATGCAGAGAAATTGCCATGGCTTCTTGAGAAGCTGCCTGGAATGATTGATGAAGGAGATGTCTTGGTATTTGCTTCCAAAAAGGCTACTGTGGACGAAATTGAATTACATCTGGCACAAAGAGGCTTTAAAGTGGCAGCTCTGCATGGTGATAAAGATCAAGCTTCTCGAATGGATATCCTACAGAAGTTTAAATCTGGTGCTTATCATGTTCTTATTGCAACCGATGTTGCTGCTCGTGGTCTTGATATCAAATCAATCAAGTCAGTGGTAAACTTTGATATTGCAAAAGATATGGATATGCATGTACATCGCATTGGCAGAACAGGTCGTGCAGGTGACAAAGATGGGACTGCATACACTCTTATAACTCAGAAAGAAGCACGTTTTGCCGGTGAGCTGGTTAATAGCTTAATAGCAGCTGGTCAGAATGTGTCCATGGAGTTGATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCCAAACGTGATGCAAGAAAAGGAGGTGGGAAAAAAGGTAAGGGGAGGGGAGGGGGTGTCGGTAGAGGCGTGCGTGGAGTTGATTATGGTTTGGGTATTGGATACACTCCGGAGTCCAATAACCCTTCACCTAGTACAACAAGTCGGTCTGCTGCTGCCAACTCACTGCGAACCGGGATGATGGTACAATTTAAGAGCAACTTTGTTGCTGCTTCATCAAACTCTCAAAACCAAAGCTACGCTAACAGCACAAGTATGCCTGCTAATAAGAGACCCGCCCTCCCTGGCTTCATATCTGGTGGGTCAATTGGGGGTGACGTAAAAACGAATCAGACTCCTGCTTCATCCAGACCTGCTAATTCAGCTGTAAATGCTAGTAGTCACAACTCTGGAGTTGATGCTGGTCGGAGGAATACCGACAGCAGCGCCAGGCCTAGAGAAAGAAGGAGGCCTTCAGGCTGGGACAGATAG 2298 0.4591 MSKRKFGFEGFGINRQSTYNFERSQAPQRLYVPPSSRHGHDNYEDTDLDNIEYDDNDAPKDGNNGNSDDIDPLDAFMEGIHEEMKAAPPPLPKEKAEDRYRDDDEDDPMESFLRAKKDVGLTLASDALHAGYDSDEEVYAAAKAVDAGMIDYDSDDNPILVDKKKIEPIPALDHSSIEYEPFNKDFYEEKPSISDMSEQDVAEYRKSLAIRISGFDVPKPIKTFEECGFSPQLMNAIKKQGYEKPTSIQRQASPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKPYGLRVSAVYGGMSKLDQFKEIKAGCEIVVATPGRLIDLLKMKALTMMRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRRVEKLAREILSDPVRVTVGEIGMANEDITQVVQVISSDAEKLPWLLEKLPGMIDEGDVLVFASKKATVDEIELHLAQRGFKVAALHGDKDQASRMDILQKFKSGAYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGTAYTLITQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSKRDARKGGGKKGKGRGGGVGRGVRGVDYGLGIGYTPESNNPSPSTTSRSAAANSLRTGMMVQFKSNFVAASSNSQNQSYANSTSMPANKRPALPGFISGGSIGGDVKTNQTPASSRPANSAVNASSHNSGVDAGRRNTDSSARPRERRRPSGWDR 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0153 765 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 193 602 - -
Lele06g0153 765 MobiDBLite consensus disorder prediction 609 661 - -
Lele06g0153 765 MobiDBLite consensus disorder prediction 83 106 - -
Lele06g0153 765 SMART ultradead3 241 443 IPR014001 -
Lele06g0153 765 MobiDBLite consensus disorder prediction 686 765 - -
Lele06g0153 765 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 222 250 IPR014014 GO:0003724
Lele06g0153 765 MobiDBLite consensus disorder prediction 1 69 - -
Lele06g0153 765 Gene3D - 430 606 IPR027417 -
Lele06g0153 765 CDD SF2_C_DEAD 440 572 - -
Lele06g0153 765 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 601 IPR027417 -
Lele06g0153 765 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 431 IPR027417 -
Lele06g0153 765 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 374 382 IPR000629 -
Lele06g0153 765 MobiDBLite consensus disorder prediction 713 746 - -
Lele06g0153 765 MobiDBLite consensus disorder prediction 645 661 - -
Lele06g0153 765 CDD DEADc_DDX42 233 429 - -
Lele06g0153 765 MobiDBLite consensus disorder prediction 13 31 - -
Lele06g0153 765 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 253 428 IPR014001 -
Lele06g0153 765 FunFam probable ATP-dependent RNA helicase DDX17 184 431 - -
Lele06g0153 765 Gene3D - 184 429 IPR027417 -
Lele06g0153 765 SMART helicmild6 481 562 IPR001650 -
Lele06g0153 765 Pfam DEAD/DEAH box helicase 246 417 IPR011545 GO:0003676|GO:0005524
Lele06g0153 765 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 453 602 IPR001650 -
Lele06g0153 765 Pfam Helicase conserved C-terminal domain 465 562 IPR001650 -
Lele06g0153 765 MobiDBLite consensus disorder prediction 748 765 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0153 Lele-ChrLele06 940166 945038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0153 222 578 Eukaryotic Initiation Factors Gene Family AT3G13920 34.722 2.36e-60 208