LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele06g0109	ATGGTAAACCAACAACAACAACGCCGTGCATTGACCTCCACTAGCTCCGGCGACTTCCTCCGCCAGAATTTAGGTCCAATGAACGACGACCCCATCGATCGTCCTATCATCAAAGAAATGGATTTCTTCTCTTGTGCTTCACCCGGTAAATCTTTCGAGACTAGAAAGCAGCGGCACCAAGATCCTGACGACAGGATCAATCACGATGGATCATCAACTGCTCTCTCACCTGATCGCCCCGTTAACACTGGACTGAATTTGAACTGTGCAAGTTCTGGAATGCCAAGATTCGAAAACGATCAGGAGAAGCTCGATACAGAACTGTGTGCACTTCAAGGGGAATTGCGGAGGCTTCATGAAGAGAATCAGAAGTTGAAAAATGCGCTGGAACAGATCACCAAAAGCTATAACCAACTGCATGCACATTTGTTTATCGCTATGCATAAACAAAAGACTCAGAATGTTGAAGCAAATGGGATGTTGTCGGGGCAGGAGATATTGGACCCACGGCCGTCTACCAAATCGAAAGTGAATAATTCGGGTTCAGACTACAAGACTCAAGAGCTTTCAGTCTCTCCTTCATCAAACAATGCGGTCATGTCAAAGCAACTCCATCAATCACCTAAACTTCATGGAAAGCAAGCAGCTTGCCCTGAAACTATTTCCAAATTACCAGATCTCAAAAGCCAAGAACCAAACGCGGATATTCATTTCAGAAAAGCCAGGGTTTCCGTACGTGCAAGATCAGAAGCTCTTCTGATTAGTGATGGATGTCAATGGAGGAAATATGGTCAAAAAATGGCCAAGGGTAACCCTTATCCTCGCGCCTACTATCGTTGTACTATGGCCGTTGGATGCCCCGTTCGTAAGCAGGTGCAAAGATGTGCTGAAGACAAGACGGTGCTGATAACAACGTACGAAGGGAATCACGACCACCCCCTCCCACAGGCGGCCACCGCTATGGCAAATACGACATCGGCAGCCGCAGCGATGCTCCTATCAGGTTCAACTATGAACAATGAAGCCTTAATAAATTCAGGTGGAGGGTACTTGCCGTCCATGCCCTACGCTTCAGTGGCAACCCTATCAGCCTCTCCACCGTTTCCTACTATCACTCTGGACTGGACTCAGACCCCCAAAAGCGTGCAGCTTCACCGGCAACCGTCCCATGAGGTTACGTTTCCTCTGCCATTGCACGGTCACCCACTGCACTGTCATCAGAAGGCACCGTTAGGGCAGCAACGTCAGCCTTCTATGGTTGAGAAAATGAGTGCAGCTATAGCCTCTGATCCGAACTTCACAGCGGCGCTAGAGGCGGCGATTTCTTCTATCTTTGGGAGTAATTTGAATAGCGACGGTGGGAGTGGAAGTGGAAATGCTGTTTCTGCGCCGCCTAAGCTTCCTCCGTCCTGCACAACATTCTCCACCAACTAG	1434	0.4868	MVNQQQQRRALTSTSSGDFLRQNLGPMNDDPIDRPIIKEMDFFSCASPGKSFETRKQRHQDPDDRINHDGSSTALSPDRPVNTGLNLNCASSGMPRFENDQEKLDTELCALQGELRRLHEENQKLKNALEQITKSYNQLHAHLFIAMHKQKTQNVEANGMLSGQEILDPRPSTKSKVNNSGSDYKTQELSVSPSSNNAVMSKQLHQSPKLHGKQAACPETISKLPDLKSQEPNADIHFRKARVSVRARSEALLISDGCQWRKYGQKMAKGNPYPRAYYRCTMAVGCPVRKQVQRCAEDKTVLITTYEGNHDHPLPQAATAMANTTSAAAAMLLSGSTMNNEALINSGGGYLPSMPYASVATLSASPPFPTITLDWTQTPKSVQLHRQPSHEVTFPLPLHGHPLHCHQKAPLGQQRQPSMVEKMSAAIASDPNFTAALEAAISSIFGSNLNSDGGSGSGNAVSAPPKLPPSCTTFSTN	477

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele06g0109	477	Gene3D	WRKY domain	239	316	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele06g0109	477	MobiDBLite	consensus disorder prediction	1	33	-	-
	Lele06g0109	477	FunFam	probable WRKY transcription factor 31	239	316	-	-
	Lele06g0109	477	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	98	452	IPR044810	GO:0003700
	Lele06g0109	477	MobiDBLite	consensus disorder prediction	1	22	-	-
	Lele06g0109	477	MobiDBLite	consensus disorder prediction	164	195	-	-
	Lele06g0109	477	MobiDBLite	consensus disorder prediction	52	68	-	-
	Lele06g0109	477	ProSiteProfiles	WRKY domain profile.	249	315	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele06g0109	477	MobiDBLite	consensus disorder prediction	168	195	-	-
	Lele06g0109	477	Coils	Coil	111	142	-	-
	Lele06g0109	477	MobiDBLite	consensus disorder prediction	48	82	-	-
	Lele06g0109	477	Pfam	WRKY DNA -binding domain	256	313	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele06g0109	477	SMART	WRKY_cls	254	314	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele06g0109	477	MobiDBLite	consensus disorder prediction	453	477	-	-
	Lele06g0109	477	SUPERFAMILY	WRKY DNA-binding domain	248	315	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele06g0109	Lele-ChrLele06	680912	683408	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele06g0109	1	477	WRKY Transcription Factor Family	AT4G01720	36.431	5.43e-78	250

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Lele06g0109		WRKY	3.5e-24	CL0274

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele06g0109	06	680912	683408	Lele07g0312	07	1721290	1723773	hybridization
	Lele06g0109	06	680912	683408	Lele08g0111	08	671770	674723	hybridization