Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0107 ATGGCAACCCTAACTGACCTCCCTTCATTATCACCAACCCAAGTCCTGCTTTATTCTACTCGGTCTTTCGTTAGTTCTCGAACCTCTTTCATCTGCCCAATCATCCCTTTTCACTCGCGTTCTCCTTCCAATCGGAGAATCGCTTGCATTCGCCCTAATGTGCGGTGCTCAGTTGCAGAGGAGTCCACAGTATCTCCAGCAAAATCTAGGGGCCAACTCAATTCCGGCGGTAATGACTCTGAGTCCGTGGATTGCGTGATCGTTGGCGGAGGCATCAGTGGCCTCTGTATTGCCCAGGCCCTTTCCACAAAGCATACCAATGCCGCTGCAAAAGTGATTGTCACCGAGGCCAGAGACCGGGTTGGCGGTAACATTACGACTATTGAGAGGGATGGCTATCTTTGGGAGGAGGGCCCTAACAGTTTTCAGCCCTCTGATCCTATGCTTACCATGGTGGTGGACAGTGGGTTGAAGGATGACCTTGTTCTTGGTGATCCTAATGCGCCTCGATTTGTATTATGGAATGGAAAATTGAGGCCAGTGCCATCAAAGCCAGCTGATTTGCCTTTCTTTGACTTGATGAGCATCGGTGGCAAACTGAGAGCAGGCTTTGGAGCACTAGGCCTTCGGCCACCTCCACCAGTTTGTCCTCTTGAACTCCTTCTTTGTTTAATCATATCATGTGTCTATGCGGGTGATCCTTCAAAATTAAGTATGAAAGCAGCATTTGGAAAAGTTTGGAGGCTGGAGCAAAATGGAAGTAGCATAATTGGTGGCACTTTCAAAACACTACAGGAGAGAAATACATCTCCCCCACCTCCTCGTGACCCATGTAGACGTCTTCCAAAACCAAAGGGTCAAACTGTTGGGTCTTTTCGAAAGGGACTTAGCATGTTGCCAAAAGCAATTTCTGCAAGGTTGGGTGACAGAGTGAAGTTATCTTGGAAGCTTTCAAGCATTAGAAAACTTAACAGCGGAGAATACAGTTTGACATATGAAACACCAGAAGGAGTGGTTTCTGTGCAAAGCAGAACTGTCGTCCTGACCATTCCTTCTTTTGTTGCTAGTACACTGCTACGTCCTTTATCTACTACTGCTGCAGATGCACTTTCAAAGTTTTATTATCCTCCAGTTGCTGCCTTTGACAATGAGGAAACTAAACCATTTTTTGATTTTAAAGGAACTATATACAGCTCATCTCTCTTTCCAAACCGAGCTCCTCCTGGAAGGATTCTACTTTTGAATTACATTGGAGGGGCCACAAATCCTGGAATCTCATCAAAGATAGATCTGCCCCTCCTATTTGCTCATGAAGCATTTTCTTTTTCCCAGACGGATGATGCCCTTGTGGAAACAGTTGACCGAGATTTGAGGAAAATCCTTATAAACCCAAACGCAAAGGACCCGCATGTATTGGGCGTGAGATTGTGGCCTCAAGCTATTCCGCAATTCTTAATTGGCCATTTCGATCTCTTAGACGCTGCTAATGCTGCTCTGAGGAATACTGGGCATGAAGGGCTGTTTCTTGGGGGCAACTATGTGTCTGGGGTTGCCTTGGGACGATGTGTTGAGGGAGCTTATGAGACGATGGGGAAAGCCTCTAGCTCTTCTTCTTCCTCTATAAGCAGCAACAACCACCCACTTATCTCCACCGCTTCATCCCTCACTCGCCTCCATAGCTCGGATCTTCCTACGGATCTCAGGCTTGGTCTCAGCATTTCTGCAACTCAACATGTTGGCTCTTCTGTTTCAAGGGGTCAAGGAACAGATTATTGGATCCCAAACCAGCGAGCTCATGCGGCAGAAGTAAATGATTGTGGCGATCATAGCAGCTTGTTTGTAAAGGTATACATGGAAGGCATTCCAATAGGCAGAAAACTCAATCTGGTAGCTCACGATGGCTACCATGAGTTAGTGAGGACTCTGGAAAACATGTTTGACACTACCATTCTCTGGGGCACAGGTATGGATGGGGTGCAACCAGAGAGGTGCCATGTGCTAACATACGAAGACGAAGAAGGAGATTTGGTGATGGTCGGCGATGTTCCATGGGAAATGTTCCTATCGACAGTGAAGAGGTTGAAGATAACGAGGGTAGACGCATTCGGGTTTAGTTGTAGTGGTAGTGATCTGTGA 2136 0.4682 MATLTDLPSLSPTQVLLYSTRSFVSSRTSFICPIIPFHSRSPSNRRIACIRPNVRCSVAEESTVSPAKSRGQLNSGGNDSESVDCVIVGGGISGLCIAQALSTKHTNAAAKVIVTEARDRVGGNITTIERDGYLWEEGPNSFQPSDPMLTMVVDSGLKDDLVLGDPNAPRFVLWNGKLRPVPSKPADLPFFDLMSIGGKLRAGFGALGLRPPPPVCPLELLLCLIISCVYAGDPSKLSMKAAFGKVWRLEQNGSSIIGGTFKTLQERNTSPPPPRDPCRRLPKPKGQTVGSFRKGLSMLPKAISARLGDRVKLSWKLSSIRKLNSGEYSLTYETPEGVVSVQSRTVVLTIPSFVASTLLRPLSTTAADALSKFYYPPVAAFDNEETKPFFDFKGTIYSSSLFPNRAPPGRILLLNYIGGATNPGISSKIDLPLLFAHEAFSFSQTDDALVETVDRDLRKILINPNAKDPHVLGVRLWPQAIPQFLIGHFDLLDAANAALRNTGHEGLFLGGNYVSGVALGRCVEGAYETMGKASSSSSSSISSNNHPLISTASSLTRLHSSDLPTDLRLGLSISATQHVGSSVSRGQGTDYWIPNQRAHAAEVNDCGDHSSLFVKVYMEGIPIGRKLNLVAHDGYHELVRTLENMFDTTILWGTGMDGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDAFGFSCSGSDL 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0107 711 Gene3D - 298 528 IPR036188 -
Lele06g0107 711 Pfam AUX/IAA family 602 698 IPR033389 -
Lele06g0107 711 ProSiteProfiles PB1 domain profile. 611 701 IPR000270 GO:0005515
Lele06g0107 711 SUPERFAMILY FAD-linked reductases, C-terminal domain 391 483 - -
Lele06g0107 711 SUPERFAMILY FAD/NAD(P)-binding domain 84 526 IPR036188 -
Lele06g0107 711 Gene3D - 606 707 - -
Lele06g0107 711 Gene3D Protoporphyrinogen oxidase, mitochondrial; domain 2 267 486 - -
Lele06g0107 711 Gene3D - 86 123 IPR036188 -
Lele06g0107 711 PANTHER PROTOPORPHYRINOGEN OXIDASE 80 186 - -
Lele06g0107 711 Gene3D Protoporphyrinogen oxidase, mitochondrial; domain 2 124 180 - -
Lele06g0107 711 SUPERFAMILY CAD & PB1 domains 608 696 - -
Lele06g0107 711 TIGRFAM proto_IX_ox: protoporphyrinogen oxidase 83 534 IPR004572 GO:0004729|GO:0006779
Lele06g0107 711 Gene3D protoporphyrinogen ix oxidase, domain 3 226 266 - -
Lele06g0107 711 Gene3D protoporphyrinogen ix oxidase, domain 3 181 202 - -
Lele06g0107 711 MobiDBLite consensus disorder prediction 263 287 - -
Lele06g0107 711 Pfam Flavin containing amine oxidoreductase 229 529 IPR002937 GO:0016491
Lele06g0107 711 Pfam Flavin containing amine oxidoreductase 92 208 IPR002937 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0107 Lele-ChrLele06 663802 670523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0107 614 696 B3 DNA Binding Superfamily AT4G23980 39.759 8.90e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele06g0107 Amino_oxidase 8.1e-31 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0107 06 663802 670523 Lele07g0310 07 1708888 1709786 hybridization
Lele06g0107 06 663802 670523 Lele08g0109 08 657531 658330 hybridization