Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele06g0078 | ATGGGTATAAAGGGTTTAACAAAGCTTTTAGCAGACAATGCTCCAAAATCCATGAAGGAGCATAAATTTGAGAGCTATTTTGGCCGCAAAATTGCCATTGACGCCAGACAAGGATCCTGGAAAACTTGTATAATGGGTGTATTTGATTTGGTGCAGATTGTCGTGGGAAGAAGTGGGACTGAGATGCTTACCAATGAGACTGGTGAAGTTACAAGTTTCTCGAAGAGGGCTGATGCTGATGAGGATCTGTCTGAAGCCAAGGAGATTGGCACCAAGGAAGACATTGAGAAATTCAGTAAACGAACTGTGAAGGTGACAAAGCAACATAATGAAGACTGCAAAAGGCTTTTAAGACTCATGGGAGTGCCTGTGGTTGAGGCTCCCTCAGAAGCAGAGGCACAATGTGCTGCACTTTGCAAGTCAGGAAAGGCAAGTGGTTATGTGTATCTGGCTTATATGAATGCATGCATTTTTGTTTATGCAGTAGCTTCTGAAGACATGGATTCATTGACATTTGGAGCTCCTAAATTTCTTAGACATTTGATGGATCCTAGCTCCAAGAAAATCCCAGTCATGGAATTTGAAGTCGCAAAGATTTTGGAGGAACTAAATCTTACCATGGATCAATTCATTGACTTATGCATTCTTTCTGGGTGTGATTATTGTGATAGTATTCGAGGGATTGGGGGACTGACTGCCTTGAAACTCTTACGCCAACATGGCTCTATAGAGAATATACTGGAGAATATAAACAGAGAGAGGTACCAAATACCAGATGATTGGCCATATAAGGAGGCTCGGCAACTTTTTAAAGAACCGTTAGTCTTAACTGAAGAAGATCAACTTGATCTTAAGTGGACATCTCCAGATGAAGATGGGTTGATTACATTTTTGGTAAATGAGAATGGTTTCAATGCTGACAGGGTCACAAAGGCAATAGAAAAGATTAAAGCAGCAAAGAACAAGTCATTGCAAGGCCGGTTGGAATCCTTTTTCAAGCCTGCAGTGAATCCATCTGCACCCATTAAACGGAAGGAAGCACCAGCGAATACTGCTAAGGAGACTAAAAAAAAGGCCAAGGGTGGTAGTGGGAAGAGGAAGAAATAG | 1107 | 0.4164 | MGIKGLTKLLADNAPKSMKEHKFESYFGRKIAIDARQGSWKTCIMGVFDLVQIVVGRSGTEMLTNETGEVTSFSKRADADEDLSEAKEIGTKEDIEKFSKRTVKVTKQHNEDCKRLLRLMGVPVVEAPSEAEAQCAALCKSGKASGYVYLAYMNACIFVYAVASEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGLTALKLLRQHGSIENILENINRERYQIPDDWPYKEARQLFKEPLVLTEEDQLDLKWTSPDEDGLITFLVNENGFNADRVTKAIEKIKAAKNKSLQGRLESFFKPAVNPSAPIKRKEAPANTAKETKKKAKGGSGKRKK | 368 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele06g0078 | 368 | CDD | H3TH_FEN1-Euk | 208 | 276 | - | - | |
| Lele06g0078 | 368 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 28 | 42 | IPR006084 | - | |
| Lele06g0078 | 368 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 210 | 225 | IPR006084 | - | |
| Lele06g0078 | 368 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 117 | 134 | IPR006084 | - | |
| Lele06g0078 | 368 | Gene3D | - | 2 | 73 | - | - | |
| Lele06g0078 | 368 | CDD | PIN_FEN1 | 4 | 318 | - | - | |
| Lele06g0078 | 368 | FunFam | Flap endonuclease 1 | 205 | 272 | - | - | |
| Lele06g0078 | 368 | Pfam | XPG N-terminal domain | 1 | 35 | IPR006085 | GO:0004518 | |
| Lele06g0078 | 368 | SMART | xpgineu | 118 | 205 | IPR006086 | GO:0004518 | |
| Lele06g0078 | 368 | SMART | HhH_4 | 207 | 240 | IPR008918 | GO:0003677|GO:0003824 | |
| Lele06g0078 | 368 | MobiDBLite | consensus disorder prediction | 335 | 368 | - | - | |
| Lele06g0078 | 368 | PANTHER | FLAP ENDONUCLEASE FAMILY MEMBER | 1 | 359 | IPR006084 | - | |
| Lele06g0078 | 368 | Hamap | Flap endonuclease 1 [fen]. | 1 | 333 | IPR023426 | GO:0016788 | |
| Lele06g0078 | 368 | SUPERFAMILY | 5' to 3' exonuclease, C-terminal subdomain | 205 | 335 | IPR036279 | - | |
| Lele06g0078 | 368 | SUPERFAMILY | PIN domain-like | 2 | 220 | IPR029060 | - | |
| Lele06g0078 | 368 | ProSitePatterns | XPG protein signature 2. | 121 | 135 | IPR019974 | GO:0016788 | |
| Lele06g0078 | 368 | Gene3D | - | 74 | 208 | - | - | |
| Lele06g0078 | 368 | Pfam | XPG I-region | 121 | 220 | IPR006086 | GO:0004518 | |
| Lele06g0078 | 368 | Gene3D | - | 209 | 272 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele06g0078 | Lele-ChrLele06 | 503599 | 506932 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele06g0078 | 1 | 345 | Core DNA Replication Machinery Family | AT5G26680 | 69.974 | 0.0 | 526 |