Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0070 ATGGCTAGAAACAGAGTGTCTCTTGCATATCTCTCCAACAACACTGCAAGGAAAACAACATATAAGAAAAGGAAGAAGGGTCTTTTCAAAAAGGTGAATGAACTAGCCACTCTTTGTGGGATCCAGGCATGTGCTGTTGTTCTCAGCTCCTATGAAACTAAACCAGAGGTCTGGCCAGATCCAAGAGGAGCTCAACAGGTAATCGCAAGGTTCCAGAAAACACTTGCGCGGGATGAAACAAGGAATCTGAACCAGGAGAGTTTTACTAGGCAAAGGATTGCCAAAGTTGGTGCCCATATAAAAAAGCAGCTTGTAGAGAATCAAAAGAAGGCGATGACCCTCGCTTTATTCGAGTGTGTTGAAGGGGGGAGCGTGGATGATAAGACGATAGTGGATATTGACACCATTGATCGTCTAGCCCAGGAGAACATGAACAACATTAAGAAGATGGGGGAGTCTATTTGA 465 0.443 MARNRVSLAYLSNNTARKTTYKKRKKGLFKKVNELATLCGIQACAVVLSSYETKPEVWPDPRGAQQVIARFQKTLARDETRNLNQESFTRQRIAKVGAHIKKQLVENQKKAMTLALFECVEGGSVDDKTIVDIDTIDRLAQENMNNIKKMGESI 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0070 154 PANTHER MADS BOX PROTEIN 3 124 - -
Lele06g0070 154 FunFam Agamous-like MADS-box protein AGL80 13 97 - -
Lele06g0070 154 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Lele06g0070 154 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele06g0070 154 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele06g0070 154 SUPERFAMILY SRF-like 1 81 IPR036879 GO:0003677|GO:0046983
Lele06g0070 154 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Lele06g0070 154 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele06g0070 154 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0070 Lele-ChrLele06 448247 448711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0070 1 149 Type I MADS-box Gene Family AT5G48670 40.397 1.22e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele06g0070 SRF-TF 2.2e-16 No_clan