Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0017 ATGGTAAAGGGGGGAAAGGTTCGTGGCAAACGCAATTTCAGAAAAAGGGTTCGGTCAAAGGAAGGGGGTTCTGATGATTCGGATGAGGACTATGTGGTTCCGGATGAAGATAGAGATTTGTCTGATTGTTCGGAAGATTCATTGTCTTCTTTAGATGGATGTGCGTCCGAGGAGAGTTTTGATAACTTTGTAGAGGATGAGGAGGAGGAAGTTGAAGTAAGGAGGCAATTTAATAGATCCAAGAGAGAAACTGGCATTTGTGGCCGGCAGAAAATTGGCAGGAAGCCCTCACAACAGAGAGGAAGGATAACTTATTCACATCAACGAGAAGAAGATAAAGAAGAAGAACTAGAACAAGAAGACAGAGAAGAAGAACAAGAACAAGAAGAGGAATATGATGAAGATACAGATGAATATGAGGAAGATGATGCTGATGAAGATTTCGATTGTGATGAGGATGAGGAATTTACAGCTGAGGAAGAGGATTACTCAGATGAGGAAGAAATAAAGGGGAGAAAGAAGAAAAGTAATGGGATAAAAATGGGCAAGAAGGTTGCTCGGAAGCGGGCCTCTGTAACTTATACTAGAGGTCGTAAAAGAAGAAAGAATTCTAGAGCTGCAAGGAAGCCCTTGAGAAAGAGGAGAAGAAAGAATGGAGGGTTGAGTAGGAAAGCAAAGTATGGTGATGAGGGTGATTTTATAGATAACGGTCCTACCATCAGAACCAAGAGTATGAAAAAACCAGGACAGAAAAGGAGAAGACTAATCGTTGATTCAGATTCATTTTCAGATTGTGTGTTATCTAGATCATCTGATTATGAGTATACCATCTCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCTGAGAAATTGTGTGGATTGAGAACTAATTTGAGGAGTTCATCCCTTCTGACAAAAAATGAAGAGGATGGATTCCATGAAGATCCACATCAGCAAAGAAAGCCTCCAGCCCGCAAAGGTAAGGAAAAGCTAGAGGAACATCAGGGGAGAAAGGGCAAGGACAAGGTAGAGGATTTAAAAAGTGAGCCAGGAAAGCAGGTGTGTGGAATTTGTCTCTCTGAAGAAGATAAAAGAAGAGTAAGAGGAGTACTAGATTGTTGTACACACTTTTTTTGTTTTGCTTGCATTATGGAATGGGCAAAAGTAGAATCTCGCTGCCCTTTGTGCAAGCAGAGATTTAGAACAATCAGTAAGCCTGCACGATCAACAACAGCGGGAGTTGATTTGAGAGGATCAGTTATACAAGTCCCCGAACGTGATCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCATATGAGCAATTGGTATTGTGA 1350 0.4141 MVKGGKVRGKRNFRKRVRSKEGGSDDSDEDYVVPDEDRDLSDCSEDSLSSLDGCASEESFDNFVEDEEEEVEVRRQFNRSKRETGICGRQKIGRKPSQQRGRITYSHQREEDKEEELEQEDREEEQEQEEEYDEDTDEYEEDDADEDFDCDEDEEFTAEEEDYSDEEEIKGRKKKSNGIKMGKKVARKRASVTYTRGRKRRKNSRAARKPLRKRRRKNGGLSRKAKYGDEGDFIDNGPTIRTKSMKKPGQKRRRLIVDSDSFSDCVLSRSSDYEYTISEEEREQVREAEKLCGLRTNLRSSSLLTKNEEDGFHEDPHQQRKPPARKGKEKLEEHQGRKGKDKVEDLKSEPGKQVCGICLSEEDKRRVRGVLDCCTHFFCFACIMEWAKVESRCPLCKQRFRTISKPARSTTAGVDLRGSVIQVPERDQVYQPSEEELRSYIDPYEQLVL 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0017 449 MobiDBLite consensus disorder prediction 176 221 - -
Lele06g0017 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 331 415 IPR013083 -
Lele06g0017 449 MobiDBLite consensus disorder prediction 28 42 - -
Lele06g0017 449 ProSiteProfiles Zinc finger RING-type profile. 355 397 IPR001841 -
Lele06g0017 449 CDD RING-HC_Topors 355 397 - -
Lele06g0017 449 ProSitePatterns Zinc finger RING-type signature. 374 383 IPR017907 -
Lele06g0017 449 Coils Coil 107 142 - -
Lele06g0017 449 PANTHER F18C1.6 PROTEIN 138 448 - -
Lele06g0017 449 Pfam Ring finger domain 354 397 IPR001841 -
Lele06g0017 449 MobiDBLite consensus disorder prediction 1 17 - -
Lele06g0017 449 MobiDBLite consensus disorder prediction 1 258 - -
Lele06g0017 449 MobiDBLite consensus disorder prediction 114 165 - -
Lele06g0017 449 SUPERFAMILY RING/U-box 354 403 - -
Lele06g0017 449 MobiDBLite consensus disorder prediction 69 89 - -
Lele06g0017 449 SMART ring_2 355 396 IPR001841 -
Lele06g0017 449 MobiDBLite consensus disorder prediction 306 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0017 Lele-ChrLele06 113776 115336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0017 355 400 C3H Transcription Factor Family AT2G39100 43.478 1.24e-08 54.3