Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2768 ATGCTCAGGGGTTGCTTACTATGTTCAAGGACTGATCATGAAGGCAAAAGGGCCGGTTTTCCACACCGCTTTCAGCCCCCTAAGCATGATCATTGTCACAATCATGGGCTCAGTTGCTCTATCAGAGAAAATCTACACTGCAAGGTCAACTTACTGAACCAAAGGGATATTATCGTGTATTTGTTTGGGGTCTTGAACTATATTGGGTTTAAGAGAGAAAGATCAGATGATGTTCACAGCATCGCCATGGCCAACTACTTGATGCTGCTTTCTGAGGCCGCCGCCACCTTCTCTTCTTCCTCTTCCAACTCCTCCAACGGCCGTGTCTTCGCCTGCAAGACCTGCAACCGCCAGTTCTCCTCCTTCCAGGCCCTCGGCGGCCACCGTGCCAGCCACAAGAAGCCCCGGACGGTGTCCGGTGAGTATAGTAACAGCGATGATCTTCTTCATGGTTCATCGTCATCACCGGCTAAGCCTAAAACTCATGAGTGCTCAATATGTGGATCGGAGTTCGCCATAGGTCAGGCTTTGGGGGGTCACATGAGGAGACACAGAGGTCAAACATCTCATAATAATAACAGTAACAACGATAACTCGTCATCAAGCCTCGAGTTTGATTCAGATGCAACAAAGAAGAAGAAGAGGAAAAGGGTTCTGTTTCTGGACTTGAACTTGACGCCCCTTGAGAACGATTTGGAGATTTTAGGGATAGGAACCTCTTCTCCTTTGCTTGTGACACTTTAG 744 0.4825 MLRGCLLCSRTDHEGKRAGFPHRFQPPKHDHCHNHGLSCSIRENLHCKVNLLNQRDIIVYLFGVLNYIGFKRERSDDVHSIAMANYLMLLSEAAATFSSSSSNSSNGRVFACKTCNRQFSSFQALGGHRASHKKPRTVSGEYSNSDDLLHGSSSSPAKPKTHECSICGSEFAIGQALGGHMRRHRGQTSHNNNSNNDNSSSSLEFDSDATKKKKRKRVLFLDLNLTPLENDLEILGIGTSSPLLVTL 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2768 247 ProSitePatterns Zinc finger C2H2 type domain signature. 112 132 IPR013087 -
Lele05g2768 247 MobiDBLite consensus disorder prediction 141 160 - -
Lele05g2768 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 162 189 IPR013087 -
Lele05g2768 247 MobiDBLite consensus disorder prediction 126 161 - -
Lele05g2768 247 MobiDBLite consensus disorder prediction 178 208 - -
Lele05g2768 247 SMART c2h2final6 110 132 IPR013087 -
Lele05g2768 247 SMART c2h2final6 162 184 IPR013087 -
Lele05g2768 247 ProSitePatterns Zinc finger C2H2 type domain signature. 164 184 IPR013087 -
Lele05g2768 247 PANTHER ZINC FINGER PROTEIN ZAT5 77 230 - -
Lele05g2768 247 SUPERFAMILY beta-beta-alpha zinc fingers 108 184 IPR036236 -
Lele05g2768 247 Pfam C2H2-type zinc finger 162 186 - -
Lele05g2768 247 Pfam C2H2-type zinc finger 109 135 - -
Lele05g2768 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 137 IPR013087 -
Lele05g2768 247 Gene3D Classic Zinc Finger 90 186 - -
Lele05g2768 247 MobiDBLite consensus disorder prediction 188 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2768 Lele-ChrLele05 43499920 43502780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2768 70 238 C2H2 Transcription Factor Family AT2G28710 44.970 6.50e-36 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele05g2768 zf-C2H2_6 3.2e-09 CL0361