Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2740 ATGAGCACCAACACATCGGAGGCGCACGGCTCTAAGCCGTCGTTTACTGGATATGCCCATTACTCGATCGGACTATCCACTGGAATTCTCCTTCTCTTCGCATTCTTCACCGTAATCTTGTACCTCTGCTCCCGCAGAATAGCCATGAACCCGACGCAACTGTCACGAGTTCGCAACGCAAGCTTTGGCTTACACACCATTAGCATCGGAGATGCTCCGGGGACGAACCGTGGTACACAGTTTGGTGTGGATGAAGAGACGCTGAAGAGTTATCCGGTGCTGTTATACTCGGAAGTGAAGCATGGTCGGAAAGGCGGTGCCAGTGGTGGCGATTCTGCGGAGGCTACTTGTTCGATATGCTTGGGGGATTTCAGTGACAGTGAGTGGTTGAGGGAGTTGCCGGATTGTCATCACTTGTTTCACCAGAAGTGTATTGATATGTGGCTGAGGATGAACTCTTCGTGTCCGTTGTGTCGGACGTCGCGGCTTCCGACGCCAATTTCAACTCCACTTGCTCAAGTCGCTCCTCTCCCTTGGCAAGATCAGGGGCTTGAGTTTGTAAGTGTTTAA 570 0.5175 MSTNTSEAHGSKPSFTGYAHYSIGLSTGILLLFAFFTVILYLCSRRIAMNPTQLSRVRNASFGLHTISIGDAPGTNRGTQFGVDEETLKSYPVLLYSEVKHGRKGGASGGDSAEATCSICLGDFSDSEWLRELPDCHHLFHQKCIDMWLRMNSSCPLCRTSRLPTPISTPLAQVAPLPWQDQGLEFVSV 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2740 189 SUPERFAMILY RING/U-box 90 164 - -
Lele05g2740 189 Pfam Ring finger domain 116 159 IPR001841 -
Lele05g2740 189 SMART ring_2 117 158 IPR001841 -
Lele05g2740 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 163 IPR013083 -
Lele05g2740 189 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 10 173 IPR045899 -
Lele05g2740 189 CDD RING-H2_PA-TM-RING 116 159 - -
Lele05g2740 189 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Lele05g2740 189 FunFam E3 ubiquitin-protein ligase ATL6 72 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2740 Lele-ChrLele05 43228814 43229383 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2740 17 177 C3H Transcription Factor Family AT2G35910 44.720 1.52e-37 127