Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2739 ATGAGCAGCAACAGTACGTCGGAGCCTGGTGGTTCTTCGGCAGACTTAGGCGGATATGCCTATTACTCCTTCGGATTATCCGTTGGAGTTCTTCTTCTCTTTGCATTCCTCACTTGTCTCTTATACTACTGCACCCGCAGAAACGCCTTGAACACATCACAAGATTTCTCCCCAAGCTTTCGCTTACACACCGTTAGTATCGCCGGAGATTCCGACTGTCTACCAGCAGGTGTCGACGAAGCGACCCTGAAGAGTTATCCGGTGCTGTTGTACTCCGAAGCGAAGCGCGATCGGAAGGGTGATTCTGCGGCTACTTGTTCGATATGCTTGGGGGATTTCAGTGACAGTGAGTGGTTGAGAGAGTTGCCGGATTGTGGTCACTTGTTTCACCGGAAGTGTATCGATATGTGGCTGAGGATGAACTCTTCGTGTCCGTTGTGTCGGACCTCACCGCTTCCAACGCCGGTTTCCACTCCGCTGGCCGAAGTTGCTCCATTGGCAAGAAATTGA 510 0.5157 MSSNSTSEPGGSSADLGGYAYYSFGLSVGVLLLFAFLTCLLYYCTRRNALNTSQDFSPSFRLHTVSIAGDSDCLPAGVDEATLKSYPVLLYSEAKRDRKGDSAATCSICLGDFSDSEWLRELPDCGHLFHRKCIDMWLRMNSSCPLCRTSPLPTPVSTPLAEVAPLARN 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2739 169 SMART ring_2 106 147 IPR001841 -
Lele05g2739 169 CDD RING-H2_PA-TM-RING 105 148 - -
Lele05g2739 169 FunFam E3 ubiquitin-protein ligase ATL6 68 153 - -
Lele05g2739 169 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Lele05g2739 169 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 12 162 IPR045899 -
Lele05g2739 169 SUPERFAMILY RING/U-box 105 153 - -
Lele05g2739 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 152 IPR013083 -
Lele05g2739 169 Pfam Ring finger domain 105 148 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2739 Lele-ChrLele05 43219296 43219805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2739 15 167 C3H Transcription Factor Family AT2G35910 54.839 2.29e-44 144