Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2727 ATGACGACGACGACTCAGTGGACTCGCCGTGAGGACAAGCTCCTCGAGCAGGGTATAGTCTTGTTTCCAGAGGGTTGCCCCAACCGCTGGGAGAAGATTGCTGACTTCGTCCCCGGCGCCACCGTCGATTTGGTCTGGCAACGTTATCACGATCTACTACACGACGTGGCTGAGATTGATGCCGGTCGGGTTCCGATTCCGGCCTTTCCTGACTTTCCCTCTGATACTGAGCCCTCCTCCTCCGATTGGAACTCCGCTAATCAAATTTCGTTCAACTCCAAGCCGCCTAAGAGTTCTGACACCGACAGAAAGAAGGGCACGCCTTGGACTGAGGAAGAACATAGGCTATTCCTCAGAGGATTGGAGAAATATGGCAAGGGAGATTGGAGAAGCATTTCGAGAAACGTCGTGGTGACAAGAACACCGACTCAAGTAGCTAGCCATGCTCAGAAATACTTCAATCGCCAAAGGGAAAAAGCAAAGAAAGAGAGGAAAAGAGCAAGCATTCATGATATCACAACTGCAGACACCAACGTGGAACCTGTAGATCAAAACCAGATTGCTCCTTCAAACCTTCAAACCCAGATTGTCTCTTCAGGCCTTCCAGTTCATCATCAATCATCTCCAATGCTTCAGTTTAACCAACAAAACCCTTCAATGGATCAATCTCTTGGGTTTGGGTACCCAAACTATGCTTTCCCAATCTAG 708 0.4901 MTTTTQWTRREDKLLEQGIVLFPEGCPNRWEKIADFVPGATVDLVWQRYHDLLHDVAEIDAGRVPIPAFPDFPSDTEPSSSDWNSANQISFNSKPPKSSDTDRKKGTPWTEEEHRLFLRGLEKYGKGDWRSISRNVVVTRTPTQVASHAQKYFNRQREKAKKERKRASIHDITTADTNVEPVDQNQIAPSNLQTQIVSSGLPVHHQSSPMLQFNQQNPSMDQSLGFGYPNYAFPI 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2727 235 MobiDBLite consensus disorder prediction 97 111 - -
Lele05g2727 235 ProSiteProfiles Myb-like domain profile. 7 53 IPR001005 -
Lele05g2727 235 SUPERFAMILY Homeodomain-like 103 157 IPR009057 -
Lele05g2727 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 157 IPR017930 -
Lele05g2727 235 Pfam Myb-like DNA-binding domain 108 153 IPR001005 -
Lele05g2727 235 ProSiteProfiles SANT domain profile. 104 157 IPR017884 -
Lele05g2727 235 Gene3D - 107 158 - -
Lele05g2727 235 SUPERFAMILY Homeodomain-like 5 59 IPR009057 -
Lele05g2727 235 MobiDBLite consensus disorder prediction 74 96 - -
Lele05g2727 235 MobiDBLite consensus disorder prediction 68 111 - -
Lele05g2727 235 CDD SANT 7 53 IPR001005 -
Lele05g2727 235 FunFam transcription factor MYB1R1 107 158 - -
Lele05g2727 235 SMART sant 105 155 IPR001005 -
Lele05g2727 235 SMART sant 3 55 IPR001005 -
Lele05g2727 235 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 104 156 IPR006447 GO:0003677
Lele05g2727 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
Lele05g2727 235 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 221 IPR043363 -
Lele05g2727 235 Gene3D - 2 66 - -
Lele05g2727 235 ProSiteProfiles Myb-like domain profile. 101 153 IPR001005 -
Lele05g2727 235 CDD SANT 108 153 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2727 Lele-ChrLele05 43094427 43096108 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele05g2727 Myb_DNA-binding 2.4e-13 CL0123