Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2715 ATGAATAGTCTATTTTCTGGTAAAAGGACAAAGAAAGATGGGCCAGAAGAGGAAGAGGAGGAGGAGGAGGAGGGCATGTGGGAAAGACAGAGGCAGATGGATGAAAATATTCCAAAACTGAATGAGAAGCAAGAATCCAAGGCATGCACAAAGTCCAAGTCCACCACCACCAGAAGAGAACAGAATGACGATGATGATCTATGTCTGAATACCCCACGGAAGCAACTCGCAATGGACTCTGGAGCGATCCTTCTCCCAAAATGGGCATCAAAGCCTTGCATCATGGGAATTGACGAAGCTGGCCGAGGACCCGTTTTAGGACCCATGGTGTATGGATGCTTGTACTGTGCTCGCTCCTATCAGAAGACCCTCGCAACTTTGAGTTTTGCTGATTCGAAGACACTAAAAGAAGAGAAGAGGGAAGAATTATTTGATAGTCTAAAGGGTAATGAATCAATTGGATGGGCAGTTGATGTCTTAGACCCAAGGGAACTCTCAGCTAAAATGTTGAAGAGGAACAAGATAAATCTGAATGAGATATCGCATCAATCTGCAATGGGCTTGATTGATAGGGTACTGAAGATGGGAGTTCTTCTGACTGAGGTCTATATAGATACAGTTGGAGATCCAGGAAAATATGAAATTATGCTGTCAAAAAATTTCCCTTCTATCAAATTTGTGGTTGCAAAGAAGGCTGATAGTCTCTATCCTGTTGTGAGTGGTGCTAGCATAGTTGCAAAGGTCACTAGAGACCGAGCTTTGCGGGAATGGGTGCTTGATGAGACTGCTGAAAACATGCACAGGAACTTTGGGTCTGGATATCCTGGAGACCCCAAAACCAAATCCTGGTTAGAACAACACAAACATTCTGTCTTTGGATTCCCAACATTGGTCAGATTCAGCTGGGGAACCTGCACTACATATTTTAAAGATGCTGTGGAAGTCTTATGGGAATCTGATAAAATGGATGAAGAAGGGGAAGGTGGAAGCAACGGTGGGAAGCGGCAATTGAAATTAAGAAACGTAGGTTTCAGCACATCAAAGAGAAAAAGTGAAGAAATAGAATCAAGTGGCAAAGGTCGCAGCAGGTTTTTCCAGACTCGGAAGCTTGAAATTGTTACTGATTTCTGA 1131 0.4341 MNSLFSGKRTKKDGPEEEEEEEEEGMWERQRQMDENIPKLNEKQESKACTKSKSTTTRREQNDDDDLCLNTPRKQLAMDSGAILLPKWASKPCIMGIDEAGRGPVLGPMVYGCLYCARSYQKTLATLSFADSKTLKEEKREELFDSLKGNESIGWAVDVLDPRELSAKMLKRNKINLNEISHQSAMGLIDRVLKMGVLLTEVYIDTVGDPGKYEIMLSKNFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALREWVLDETAENMHRNFGSGYPGDPKTKSWLEQHKHSVFGFPTLVRFSWGTCTTYFKDAVEVLWESDKMDEEGEGGSNGGKRQLKLRNVGFSTSKRKSEEIESSGKGRSRFFQTRKLEIVTDF 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2715 376 SUPERFAMILY Ribonuclease H-like 93 310 IPR012337 -
Lele05g2715 376 FunFam Ribonuclease 266 313 - -
Lele05g2715 376 FunFam Ribonuclease 73 264 - -
Lele05g2715 376 MobiDBLite consensus disorder prediction 1 69 - -
Lele05g2715 376 MobiDBLite consensus disorder prediction 323 359 - -
Lele05g2715 376 Gene3D Ribonuclease hii. Domain 2 265 312 IPR023160 GO:0004523
Lele05g2715 376 PANTHER RIBONUCLEASE H2 SUBUNIT A 85 363 IPR001352 GO:0003723|GO:0004523
Lele05g2715 376 Pfam Ribonuclease HII 95 305 IPR024567 GO:0004523
Lele05g2715 376 TIGRFAM TIGR00729: ribonuclease HII 94 307 IPR004649 GO:0004523|GO:0016070
Lele05g2715 376 MobiDBLite consensus disorder prediction 345 359 - -
Lele05g2715 376 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 92 314 IPR024567 GO:0004523
Lele05g2715 376 MobiDBLite consensus disorder prediction 26 69 - -
Lele05g2715 376 CDD RNase_HII_eukaryota_like 95 311 - -
Lele05g2715 376 Gene3D - 71 264 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2715 Lele-ChrLele05 43025523 43031534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2715 84 376 Core DNA Replication Machinery Family AT2G25100 67.577 9.34e-147 414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g2715 05 43025523 43031534 Lele07g2736 07 32857484 32860901 hybridization
Lele05g2715 05 43025523 43031534 Lele08g2645 08 32106110 32108877 hybridization