Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2707 ATGACAAGAGAGGTGGTGAAACGATATGAGTATATCTCTGATGACACCAAAAGAGCAGTAACATTCAAGAAAAGGAAATCATGTATCTTTAATAAGATACAAGAACTTAGCATTCTTTGTGGTATTGATGTTGGGGCAATCGTTTACAGTGGTCCCTCTGATCCTGAACCAGAGGTTTGGCCAGATCATGAAGGTGTCCAGCAAGTAATCGAGAGGTGTCAATCTAGATCCGTCTCAAAGGGGACCATGAAGAGGGAGGAATCATTACAAAAGAGGATCAACAATGGGAAAGAACTTCTTATGAGAAGAAGAAAAGCAAACGATGAAGAAGAGATTTCCCAACTCATGATCCAATGTATGGAAGGGAAAACAGTGCCTCCCCTTACAAATTGGAGCGACATGAAGATGTTGGTTGAGCAGAGACTGAAGAACATGAACAGGACAGTGCAAGAATCTGGTAAAGAAGTGGAATTTCGTGTTTCGGCTTCTTCAATGTCAGAGGAATTGCCAGTTTTCAGAGGGAACGAGATGTTGACTAGCCAATTTCAGCAGTTCAACATAGATAATGTTCCTGCACCTCCTCCAATATCTGAAGGATTGTACATGCCATATAGTCCAACTCCACCATCATCTGAAGGATTGGAATTTAATGTGCAAAATGAAAATCTGAGCTGCCAAAATCTGCAATATGGCATGTACTTGGGAAATATGGAAGATTTTATTGGAATTGGTGCATATGAGATGCCAGGACCTTCTCACAATGCCAATTACCCACATGTTCCATCATTTTACAACCCATTTTCCTCATGA 810 0.4086 MTREVVKRYEYISDDTKRAVTFKKRKSCIFNKIQELSILCGIDVGAIVYSGPSDPEPEVWPDHEGVQQVIERCQSRSVSKGTMKREESLQKRINNGKELLMRRRKANDEEEISQLMIQCMEGKTVPPLTNWSDMKMLVEQRLKNMNRTVQESGKEVEFRVSASSMSEELPVFRGNEMLTSQFQQFNIDNVPAPPPISEGLYMPYSPTPPSSEGLEFNVQNENLSCQNLQYGMYLGNMEDFIGIGAYEMPGPSHNANYPHVPSFYNPFSS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2707 269 PANTHER MADS BOX PROTEIN 8 150 - -
Lele05g2707 269 SUPERFAMILY SRF-like 9 92 IPR036879 GO:0003677|GO:0046983
Lele05g2707 269 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Lele05g2707 269 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
Lele05g2707 269 ProSiteProfiles MADS-box domain profile. 8 50 IPR002100 GO:0003677|GO:0046983
Lele05g2707 269 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Lele05g2707 269 CDD MADS_SRF_like 10 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2707 Lele-ChrLele05 42893392 42894201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2707 1 156 Type I MADS-box Gene Family AT5G48670 39.394 2.10e-24 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele05g2707 SRF-TF 1.2e-15 No_clan