Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2696 ATGTATTGCAATTTTTTGGAGCATGCAGCCGAGTATGTGAAGCAGGCGGTTCATGAGGATGACGCTGGAACCTATAAGGAGCCATTTACTCTTTATATGAATGCTTTGGAATACCTAAAGACTCATTTGAAGTATGAGAAGAACCCCAGGATCAAGGAAACAATAAACGAGAAGTTTGTTCAATACTTGAGGAGGGCCGAAGAGATAAGTGCCATTCTTGATAGAGAACAAAGTGGGCCTAACTTGTCTGGTGGTGCACGTTGTGAGACCAAAGGCAAATACAAAGCCAAAGAAGAGAAACCAAATGTCAAATGGAGTGATGCAGCTGGACTTGAGAGTGCCAAACAGGCATTACAAGAGGCTGTGATATTGCCGGTTAAATTTCCTCAATTCTTTACGGAAAAAACCACTAATATCATAACCAATGAACTGAGACTAGCTAATCAGTTCATTCAACAATCATCAGATCTGATTTATGTTTCCTTGAATGTTTCATCATCAGATCTAGTTTCTAAATGGATGGGTGAAAGTGAAAAGCTGGTTTCCAGTCTTTTCCAAACGGCTCGTGAAAGTGCTCCTTCAATTATTTTTATTGATGAAATAGATTCTTTATGTGGCCAACGAGGTGAAGGCAATGAAAGTGAAGCATCGAGACGCATCAAAACTGAACTTCTTGTACAAATGCAAGTAGCTGCTTTTGAACTCAAATCAATTGATTTTCGATATCCTTTATCTGTGAATGGTTTTTGTGATGTTTTATTTTCTCTGTACAAATTGGCTGGTAAAGAAGACCATAAAGTTCTCATTCATGCAGCCACCAATACTCCTTATGCTCTTGATCAGGCCATCCGACGACGTTTTGACAAGAGAATATACATACCTCTCCCAGACATGAGGGCCAGGCAGCATATGTTCAAGGTGCATCTTGGAGATAACCCACATAACTTAACTGAAAAAGATTTTGAGGTTTTGGCATTCAAAACTGATGGATTTTCCGGTTCAGACATTTCTGTCTGTGTTAAGGATGTACTTTTTGAACCAGTTCGTAAAACCAGGGATTCCAAATTCTTCAGGAAAACCTCTAAAGGAATGTGGATCCCTTGCGAGCTGAAAAAGGATCTGTTAACATTAGTCTGGAAGAACTTGATCACCAAGGCCTTGCTCCAGAGGAGGATACCTAAGAAGAAAAAGGATATGTTCAGGATTGTGCCACCACCGATAACAAGAGAAGATTTTGATAAAGTATTGAGAAGGCAGAAGCCAACAGTAAGTAAATCTGATCTCGAGGTGCACGAGAGATTTACCCAGGAGTTTGGAGAGGAGGGTTGA 1329 0.4018 MYCNFLEHAAEYVKQAVHEDDAGTYKEPFTLYMNALEYLKTHLKYEKNPRIKETINEKFVQYLRRAEEISAILDREQSGPNLSGGARCETKGKYKAKEEKPNVKWSDAAGLESAKQALQEAVILPVKFPQFFTEKTTNIITNELRLANQFIQQSSDLIYVSLNVSSSDLVSKWMGESEKLVSSLFQTARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQVAAFELKSIDFRYPLSVNGFCDVLFSLYKLAGKEDHKVLIHAATNTPYALDQAIRRRFDKRIYIPLPDMRARQHMFKVHLGDNPHNLTEKDFEVLAFKTDGFSGSDISVCVKDVLFEPVRKTRDSKFFRKTSKGMWIPCELKKDLLTLVWKNLITKALLQRRIPKKKKDMFRIVPPPITREDFDKVLRRQKPTVSKSDLEVHERFTQEFGEEG 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2696 442 FunFam vacuolar protein sorting-associated protein 4A 297 422 - -
Lele05g2696 442 Pfam Vps4 C terminal oligomerisation domain 401 439 IPR015415 -
Lele05g2696 442 SMART smart 2 78 IPR007330 -
Lele05g2696 442 Gene3D - 297 422 - -
Lele05g2696 442 Gene3D - 101 430 IPR027417 -
Lele05g2696 442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 438 IPR027417 -
Lele05g2696 442 Pfam MIT (microtubule interacting and transport) domain 6 70 IPR007330 -
Lele05g2696 442 CDD AAA 109 295 - -
Lele05g2696 442 Gene3D - 4 75 - -
Lele05g2696 442 SUPERFAMILY MIT domain 3 83 IPR036181 -
Lele05g2696 442 FunFam Suppressor of K+ transport growth defect 1 6 76 - -
Lele05g2696 442 Pfam ATPase family associated with various cellular activities (AAA) 161 295 IPR003959 GO:0005524|GO:0016887
Lele05g2696 442 PANTHER AAA DOMAIN-CONTAINING 24 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2696 Lele-ChrLele05 42833004 42836793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2696 141 353 Calmodulin-binding Proteins AT3G56690 27.442 3.56e-18 85.5