Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele05g2683 | ATGATATCTTCTGGGGTTAACTTGGTGATGACTGTGATTGGATTTGCGGTGAGCACTATGTTCATCGTTTTCGTTTGCACTAGACTCATCTATGCTCGAATTCACTTGAATGCTTCTCGCCGATCCCTCCTTGTTGCTTCCAGATCCAATCTCAGTCTGCTGGAGCGGGGATATCTTGGTCTTGAACCCGTAGCGGTAGCGAACTTCCCGACGACGAAGTACAGTGATGGATGCTTTGCTGCTGCAGAAAATTCTCAATGCACAGTTTGTCTTTCAGAATACCAAGGTGAGGATGTACTGCGCATCCTCCCCTATTGTGGACACTTCTTCCATGCAACCTGCATAGACATATGGCTGCAGCAACATTCCACATGCCCTGTATGTCGAATCTCATTACGTAAATCATCCGGGAGAAAACACATAATGCAACCGTTGTTCAGTGCTGCTGTTCAATCTAATTATGGCATGGAATCTATTGAGGCTCATCCTTATCACCGTATGATGGCTAATAATGAGTTATCACCAAGAAACCCTGACGACATACATGGCGCAAACCCGATTCAAGAGGATCGTTATGCAGCCGAAGGTGGTGGAACGGTTGCTATAGGTAATGTGACCAATTTAAGTGATGGTGATGATCAGTCCATGAAAGATGCAGGGAAGAAGCATATAGAGAGCCCATCAATCCCCTTAAGCTAA | 699 | 0.4549 | MISSGVNLVMTVIGFAVSTMFIVFVCTRLIYARIHLNASRRSLLVASRSNLSLLERGYLGLEPVAVANFPTTKYSDGCFAAAENSQCTVCLSEYQGEDVLRILPYCGHFFHATCIDIWLQQHSTCPVCRISLRKSSGRKHIMQPLFSAAVQSNYGMESIEAHPYHRMMANNELSPRNPDDIHGANPIQEDRYAAEGGGTVAIGNVTNLSDGDDQSMKDAGKKHIESPSIPLS | 232 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele05g2683 | 232 | SUPERFAMILY | RING/U-box | 81 | 135 | - | - | |
| Lele05g2683 | 232 | Pfam | Ring finger domain | 86 | 129 | IPR001841 | - | |
| Lele05g2683 | 232 | PANTHER | OS11G0150450 PROTEIN | 1 | 182 | - | - | |
| Lele05g2683 | 232 | CDD | RING-H2_PA-TM-RING | 86 | 129 | - | - | |
| Lele05g2683 | 232 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 57 | 135 | IPR013083 | - | |
| Lele05g2683 | 232 | ProSiteProfiles | Zinc finger RING-type profile. | 87 | 129 | IPR001841 | - | |
| Lele05g2683 | 232 | SMART | ring_2 | 87 | 128 | IPR001841 | - | |
| Lele05g2683 | 232 | MobiDBLite | consensus disorder prediction | 203 | 232 | - | - | |
| Lele05g2683 | 232 | FunFam | E3 ubiquitin-protein ligase ATL6 | 50 | 135 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele05g2683 | Lele-ChrLele05 | 42709776 | 42711196 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele05g2683 | 12 | 160 | C3H Transcription Factor Family | AT4G10150 | 33.333 | 7.76e-21 | 85.9 |