Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2657 ATGAACTGTCTTCGGCATATTCCCTTATCCTCGGGTTTGCCTTTCCAATCCTTTAGAAGCCACCAAAGGAAGCCTCTGTGCTCTTCTAATTCATTGGGAATGTCCAATACTTGTGATCCAAATCGAAGTATAGCAGTGAAGTCTGCTTCTGGTTCCATGTCCAGTGCGGGGACAAATAGTGCCAATGTGAAGGAAGAGGAAAAATCTGAGACATATAGTCATAATATGACAGAAGCCATGGGTGCCGTTTTGACTTATAAGCACGAACAGGGGATGAACTACAACTTCATTCGTCCAGACTTAATTATAGGATCATGCCTGCAGAATCCTGAAGATGTTGACAAGCTTCGTGTAAAAGGAGTGAAAACTATATTTTGCTTGCAACAAGATCCAGACCTAGAATACTTTGGAGTTGATATCAAGGCCATTCGAGAATATGCCGGGTCTTGCAATGACATTCAACACTTGCGGGCTGAGATAAGGGACTTTGATGCATTTGACTTAAGGATGAGGCTTCCAACTGTAGTTAGCAAATTGTACAAGGCCATAAATCGCAATGGGGGTGTGACATATATACATTGCACTGCTGGACTTGGAAGAGCTCCGGCTGTTGCATTGGCTTATATGTTTTGGGTTCAGGGTTATAAACTTGATGAGGCTTATAGTTTGCTTCTGAGCAAAAGGCCATGCTTCCCAAAGTTGGATGCAATAAAAAGTGCAACAGCTGACATTCTTACAGGCTTCAGAAAAAAGCCTGTCATGTTGACGTGGGAAGACAACAATTGCACTTCAGTTGAAGTTTCTGGTCTTGATATTGGATGGGGCCAGAGAATACCCCTGCATTATGATGACAAACAGGGTTTGTGGGTTCTCAAGAGGGAATTAGCTGTAGGACATTATGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAATCAGAATGAGCTTGTGACCTATCCCAACAAAGATGGCCATGTCAATAATTATCTGCAAGTCATTGACGAAACAAATGGTGCCGATACCTCCCTTAGGAAGAGGTTGATGGGTGATGATCCTGATCTCACAAAGGATGAACGGCTGAGAATAAGACAGTTTCTAGAAGCTCTTCCTGATGAAGAACCCTGA 1128 0.4291 MNCLRHIPLSSGLPFQSFRSHQRKPLCSSNSLGMSNTCDPNRSIAVKSASGSMSSAGTNSANVKEEEKSETYSHNMTEAMGAVLTYKHEQGMNYNFIRPDLIIGSCLQNPEDVDKLRVKGVKTIFCLQQDPDLEYFGVDIKAIREYAGSCNDIQHLRAEIRDFDAFDLRMRLPTVVSKLYKAINRNGGVTYIHCTAGLGRAPAVALAYMFWVQGYKLDEAYSLLLSKRPCFPKLDAIKSATADILTGFRKKPVMLTWEDNNCTSVEVSGLDIGWGQRIPLHYDDKQGLWVLKRELAVGHYEYKYIVDGEWTCNQNELVTYPNKDGHVNNYLQVIDETNGADTSLRKRLMGDDPDLTKDERLRIRQFLEALPDEEP 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2657 375 Gene3D Immunoglobulins 248 338 IPR013783 -
Lele05g2657 375 CDD DSP_laforin-like 92 239 IPR045204 GO:0019203|GO:0046838
Lele05g2657 375 Pfam Dual specificity phosphatase, catalytic domain 148 231 IPR000340 GO:0008138|GO:0016311
Lele05g2657 375 CDD E_set_AMPKbeta_like_N 252 333 - -
Lele05g2657 375 Pfam Glycogen recognition site of AMP-activated protein kinase 252 335 IPR032640 -
Lele05g2657 375 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 89 235 IPR029021 -
Lele05g2657 375 SMART dsp_5 93 243 IPR020422 GO:0006470|GO:0008138
Lele05g2657 375 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 86 270 - -
Lele05g2657 375 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 170 229 IPR000387 GO:0016311|GO:0016791
Lele05g2657 375 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 16 373 - -
Lele05g2657 375 Gene3D Protein tyrosine phosphatase superfamily 86 366 IPR029021 -
Lele05g2657 375 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 248 338 - -
Lele05g2657 375 ProSiteProfiles Dual specificity protein phosphatase domain profile. 93 250 IPR020422 GO:0006470|GO:0008138
Lele05g2657 375 SUPERFAMILY E set domains 251 333 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2657 Lele-ChrLele05 42473834 42487733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2657 92 374 Protein tyrosine phosphatase (PTP) family AT3G52180 67.845 6.54e-147 415