Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2643 ATGGGTCGCGAGACGTTGCCAGTTCCAGCTCCACCAGCCCCAGTAGTGACAATATCGAATCCAACATCACCAGTAGTAGCACCACAAGCTCCTCCTACATCACTGGCTCCTGGGTTTCGATTTCACCCAACTGATGAGGAGCTCGTCATTTACTACCTTAAGCGTAAAGTTTGTGGAAAAACTTTCCGATTTGATGCAATCTCTGAGGTCGACATTTACAGAAGCGAGCCTTGGGACCTAGCAGATAAGTCGAGGTTAAAGACAAGGGACCAAGAATGGTATTTTTTTAGTGCATTGGATAAGAAATACGGTAATGGAGGGAGAATGAACAGGGCTACGAGCAAAGGATACTGGAAAGCCACTGGGAATGACCGTCCAGTGAGGCATGAACAAAGGACCGTGGGTCTGAAGAAAACTTTGGTATTTCATAGTGGAAGGGCTCCAGATGGTAAGCGTACCAACTGGGTTATGCATGAGTACAGGCTTGTTGATGAAGAGCTGGAAAGAGCTGGAATTGGGTCGACCCAGGATGCATACGTTTTGTGTAGAGTATTTCACAAAAATAACATAGGACCTCCAAATGGTCAACGTTATGCACCTTTCATTGAGGAAGAATGGGATAATTCATCAGCAATGATTCCAGGGGCAGAGCCCATAAAAGAAGCTACAGCCGTCCATCGCCCACTCATCGAAGGCAATGGCCATGTTGGCTGCTTTGAAGGAACTAATGTAGTCCAGGATACTTATTCCATCAATAAAGCTCCTCTTGATGTGAATAAGCTACCAATTGAAACTCAAAATCTTCTTGCTGTCTGCAAGAGGGAGAGCATGGCTGAGTTTCCGTCACCTGAAAGGGATAATTCTAAGGCTATGGATGAGTACCCGTCACCACAAACAGACAATCCAAAGCCATTCTCGCTAATATACAAAAGGCGGCGGCATAATTTGAACTCTAATAATTCAAATGTTCCTGAGCATTCGGCCCGTAACAGCCAGGATCCATGCTCATCCATAATAACAACTGCCGCAACAACGCTTCCGGCTACAACCACCACAACTGCCAGCACTTCGTCAAGAAAACACTTTTTGTCTGCATTGGTGGAGTTTTCCCTACTTGAGTCTCTCGATCCTAAGGAAAGTCCTTCGCTTCGTGTGCCAGAATTCGACCCCTCTACTCTCAACTCACCCTTGCCCCCGAGCTGCATGAAGTTCATCCAGCAGTTGCAGGAAGAGGTCCGCAAACTCTCAGTGGAAAGGGAGACAATGAAGTTCGAGATGATGAGTGCGCAGGCCATGATAAACATCCTGCAATCGCGTATCGACATGCTGACCAGAGAGAACAAGGATTTGATGAGAGGCACTGATGCGTAG 1371 0.4675 MGRETLPVPAPPAPVVTISNPTSPVVAPQAPPTSLAPGFRFHPTDEELVIYYLKRKVCGKTFRFDAISEVDIYRSEPWDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATSKGYWKATGNDRPVRHEQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVDEELERAGIGSTQDAYVLCRVFHKNNIGPPNGQRYAPFIEEEWDNSSAMIPGAEPIKEATAVHRPLIEGNGHVGCFEGTNVVQDTYSINKAPLDVNKLPIETQNLLAVCKRESMAEFPSPERDNSKAMDEYPSPQTDNPKPFSLIYKRRRHNLNSNNSNVPEHSARNSQDPCSSIITTAATTLPATTTTTASTSSRKHFLSALVEFSLLESLDPKESPSLRVPEFDPSTLNSPLPPSCMKFIQQLQEEVRKLSVERETMKFEMMSAQAMINILQSRIDMLTRENKDLMRGTDA 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2643 456 Gene3D NAC domain 44 190 IPR036093 GO:0003677|GO:0006355
Lele05g2643 456 FunFam Nac domain-containing protein 86 44 190 - -
Lele05g2643 456 MobiDBLite consensus disorder prediction 277 305 - -
Lele05g2643 456 Pfam No apical meristem (NAM) protein 37 162 IPR003441 GO:0003677|GO:0006355
Lele05g2643 456 Coils Coil 405 453 - -
Lele05g2643 456 SUPERFAMILY NAC domain 29 188 IPR036093 GO:0003677|GO:0006355
Lele05g2643 456 ProSiteProfiles NAC domain profile. 35 187 IPR003441 GO:0003677|GO:0006355
Lele05g2643 456 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 34 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2643 Lele-ChrLele05 42332321 42343389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2643 1 452 NAC Transcription Factor Family AT3G10480 43.278 3.70e-116 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele05g2643 NAM 6e-36 No_clan