Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2640 ATGGAAGCTCCAGAAGAAGTCGTCGTCATCTCTAAAGACCAAACCCATATCGTCAAAGGCAAAAGAACCAAAAGGGTAAGGCCACAGTCTCCATCGCCAATCGCCAACAAATCCGAAGAAGATCAATTTCTAGGTGAAGATGATAATAATACCAAGAACAGCTCTGCCTCCAATGCCGCCACAACAACTTCTTCTGCAGAATTTGAAAATCATAATCGTGTCATTATTAACAATAGCAGTAGAAGCACAGAGGAAGAGGAGGAGATGGCCAATTGCTTGATCCTTCTGGCTCAAGGCCAATCTCGGTATTCTCCGAAACTCGTCGAGGAAGACGGTAACATGACGATGATGATGAAGCCTAACAACAACAACAACAACAACAATTATAATTATAATAACAGCAGTAGGAAATTCATGGAAGCGTCCACCATTGGAGGAGCTAACAAAGCAGGTTTTTACGGCTATGAATGCAAGACATGTAATAAAACCTTCCCTTCTTTTCAAGCACTAGGAGGCCACAGAGCAAGCCACAAGAAGCCTAAGACCTCGTCTTCGCCTCCAATGGCCGCCGCCATTGTGGACATAGAGAAGAAGAAAGAACAAGAGTTTATTCTACACAAAAACAACAGCACGCTTTCTTTTCAGCTTTTGAATAGTGGTGTCAATAATAATAAGAATAAGGTTCATGAGTGTTCTATTTGTGGGGCTGAGTTTGCTTCGGGTCAGGCTTTAGGTGGCCACATGAGACGGCACAGAGCACCCATTGGAAACACTACAACGACAATGACAACGAATAATGCGACGATGTCGATGGCGCTTAACAACAACAATCCAGTGGGTCTGGGTTTGGAAGCAGATCACCAATATAACAATGAAGATCATCATCATCAACCCAGAAAGAAAAGGAATTTTTTGTCTTTGGATTTAGATCTTAATCTTCCTGCCCCAGAAGATGACCATCATCATCAGAGCGATTCATCCTCTTCTGCGTTTGAACCCAAGAATAAGCAGAAGCAGCAGCAACAACAACAAGCAAGTCTGGTTTTTTCTTCTGCACCTGCTTTGGTGGATTGTCATTACTGA 1083 0.4294 MEAPEEVVVISKDQTHIVKGKRTKRVRPQSPSPIANKSEEDQFLGEDDNNTKNSSASNAATTTSSAEFENHNRVIINNSSRSTEEEEEMANCLILLAQGQSRYSPKLVEEDGNMTMMMKPNNNNNNNNYNYNNSSRKFMEASTIGGANKAGFYGYECKTCNKTFPSFQALGGHRASHKKPKTSSSPPMAAAIVDIEKKKEQEFILHKNNSTLSFQLLNSGVNNNKNKVHECSICGAEFASGQALGGHMRRHRAPIGNTTTTMTTNNATMSMALNNNNPVGLGLEADHQYNNEDHHHQPRKKRNFLSLDLDLNLPAPEDDHHHQSDSSSSAFEPKNKQKQQQQQQASLVFSSAPALVDCHY 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2640 360 MobiDBLite consensus disorder prediction 311 360 - -
Lele05g2640 360 MobiDBLite consensus disorder prediction 48 79 - -
Lele05g2640 360 ProSitePatterns Zinc finger C2H2 type domain signature. 231 251 IPR013087 -
Lele05g2640 360 SMART c2h2final6 155 177 IPR013087 -
Lele05g2640 360 SMART c2h2final6 229 251 IPR013087 -
Lele05g2640 360 MobiDBLite consensus disorder prediction 328 350 - -
Lele05g2640 360 MobiDBLite consensus disorder prediction 1 83 - -
Lele05g2640 360 PANTHER ZINC FINGER PROTEIN ZAT5 77 341 - -
Lele05g2640 360 SUPERFAMILY beta-beta-alpha zinc fingers 155 251 IPR036236 -
Lele05g2640 360 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 251 IPR013087 -
Lele05g2640 360 ProSitePatterns Zinc finger C2H2 type domain signature. 157 177 IPR013087 -
Lele05g2640 360 Gene3D Classic Zinc Finger 153 251 - -
Lele05g2640 360 ProSiteProfiles Zinc finger C2H2 type domain profile. 155 182 IPR013087 -
Lele05g2640 360 MobiDBLite consensus disorder prediction 313 327 - -
Lele05g2640 360 Pfam C2H2-type zinc finger 155 180 - -
Lele05g2640 360 Pfam C2H2-type zinc finger 228 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2640 Lele-ChrLele05 42300826 42301908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2640 1 360 C2H2 Transcription Factor Family AT5G04390 41.542 1.02e-74 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele05g2640 zf-C2H2_6 9.9e-13 CL0361