LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele05g2633	ATGCGCCCGGTGGAGCGGGGCAGCTCTTTATCCCCTGGATTGTTCGTGGCAAGGATGGCAAACTCAAGCTTCAAGCCAATCCTCCGGCGAGTCTTCTTCAAGCCGTGGCCAATTCTGAAACTGGTACTAAGAAGAAGAAGCAAAAAGCTGAAAAGAGTATTGCGGAGCCGAAGCATTCCAAAGCAGCCCGAAGGTTCTACAACGAGAATTTCAGAGACTCGAAAAAAATCTGGATTTCGAAGCTTGTATATACTGTTTGCCCTTTTCTGGAGTGTCAAGATGCTTCAAGGCATGCCAGAGTTGCATCCCGAAGGAATAGTGAGGAGCTTGTATTTGAAGGCAAGGTTACGGTTAATGGCTGTGTGTAATACTCCTCAGACTAGAGTTGATCCTGCAAAGGATGTTATCTATGTCAATGGGAACCGGCTTCCTAAGAAGCAGCCCCCAAAGGTGTATTTTGCCTTGAACAAGCCAAAATGATACATCGCCACAATTGATGGCGCAGTTCATAAGCGGCACCTAATAGCCATAAGTGAGGGAACAGCTGTGGAGTTGCTTCCACACCAGCCAGATGCACCTAGAGCTCGACTTGGCATTGTGGTTCATGACGGGAGGAAACATGAAGTTCGTGAACTTGTGAAGAGTGTTGGGCTTGAGAGTGAGAGAGAAGTGATGGCGGGTAAAGAAGAAAACCGTATATTTGTGGGAGGCCTGTCTTGGGATGTAACGGAGCGTCAGCTTGAGCATGCCTTTAGTCGTTGCGGCAAAGTTATTGAATGCCAGATTATGTTGGAAAGGGACACAGGTCGTCCACGTGGATTTGGGTTTATCACATTTGCTTATCGAAGGGAAATGGAGGATGCAATCAAGGAAATGCATGGACGGGAACTTGGTGACCGCATTATCTCTGTCAACAGGGCCCAGCCCAAAATGGGGTCAGATGATCTAGACCATGGTTACTCATCGGGTGGCAGAGGAAATTATGGGGTGGGAGGCAGGGTAGGACAGGATGACTGCTTCAAATGTGGTCGACCTGGTCACTGGGCCCGAGACTGTCCTTTGGCAGGAGGAGGCCGTGGTGGGGGTGGGGGTTCATTTTCTTCACGTCCTAGGTTTGGAGGTGCTGGTGGCCATGGGGATCGCCTTGGTGAACGTGATCAAGTTATTGATGATCGTTATGATGGAGGACGTTTTGGAGATAGGGAACGCTTTGACAGCCGAGATAACAAATATGGCGGCAACCGTGATCACTATTATAGTGACAGGTACCGGCCTAGTGGAGATCGGTTTGCAAATGAGTCATATGGGGGGTCAGACCGTTATCCACAAAATAGTTATGGGAAAGATAGAGGCTATGACAGGTACGGCAGTGCAAGAAGTAATGATAGGTACGGAAGTGGAGCACCAGCACGAGACCAAGGAAGGACTTTCAGGGGTGGCCGACGTGGTGGTCCTTATGACCGTCCAAGCAGGGGTGGTCGTCCCTCTTCATTCGACCGGTACTGA	1506	0.4967	MRPVERGSSLSPGLFVARMANSSFKPILRRVFFKPWPILKLVLRRRSKKLKRVLRSRSIPKQPEGSTTRISETRKKSGFRSLYILFALFWSVKMLQGMPELHPEGIVRSLYLKARLRLMAVCNTPQTRVDPAKDVIYVNGNRLPKKQPPKVYFALNKPKXYIATIDGAVHKRHLIAISEGTAVELLPHQPDAPRARLGIVVHDGRKHEVRELVKSVGLESEREVMAGKEENRIFVGGLSWDVTERQLEHAFSRCGKVIECQIMLERDTGRPRGFGFITFAYRREMEDAIKEMHGRELGDRIISVNRAQPKMGSDDLDHGYSSGGRGNYGVGGRVGQDDCFKCGRPGHWARDCPLAGGGRGGGGGSFSSRPRFGGAGGHGDRLGERDQVIDDRYDGGRFGDRERFDSRDNKYGGNRDHYYSDRYRPSGDRFANESYGGSDRYPQNSYGKDRGYDRYGSARSNDRYGSGAPARDQGRTFRGGRRGGPYDRPSRGGRPSSFDRY	501

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele05g2633	501	SMART	rrm1_1	232	305	IPR000504	GO:0003723
	Lele05g2633	501	MobiDBLite	consensus disorder prediction	475	501	-	-
	Lele05g2633	501	Pfam	Zinc knuckle	339	353	IPR001878	GO:0003676\|GO:0008270
	Lele05g2633	501	MobiDBLite	consensus disorder prediction	378	428	-	-
	Lele05g2633	501	ProSiteProfiles	Zinc finger CCHC-type profile.	339	353	IPR001878	GO:0003676\|GO:0008270
	Lele05g2633	501	MobiDBLite	consensus disorder prediction	353	501	-	-
	Lele05g2633	501	PANTHER	SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL	228	493	-	-
	Lele05g2633	501	SUPERFAMILY	Retrovirus zinc finger-like domains	323	358	IPR036875	GO:0003676\|GO:0008270
	Lele05g2633	501	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	231	309	IPR000504	GO:0003723
	Lele05g2633	501	MobiDBLite	consensus disorder prediction	309	328	-	-
	Lele05g2633	501	Gene3D	-	317	361	-	-
	Lele05g2633	501	SMART	c2hcfinal6	338	354	IPR001878	GO:0003676\|GO:0008270
	Lele05g2633	501	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	233	302	IPR000504	GO:0003723
	Lele05g2633	501	Gene3D	-	202	314	IPR012677	-
	Lele05g2633	501	SUPERFAMILY	RNA-binding domain, RBD	228	333	IPR035979	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele05g2633	Lele-ChrLele05	42215349	42226018	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele05g2633	212	312	C2H2 Transcription Factor Family	AT2G19380	32.673	7.88e-12	65.9

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele05g2633	05	42215349	42226018	Lele07g2655	07	32083432	32088013	hybridization
	Lele05g2633	05	42215349	42226018	Lele08g2558	08	31341841	31346421	hybridization