Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2613 ATGGGTAATGTTGAAATTCCCAATTGGCTAAAAGGCTTGCCATTGGCTCCGGAATTTCGCCCAACTGATACTGAATTCGCCGACCCGATTGCTTACATTTCAAAGATTGAGAAAGAAGCTAGCGCCTTTGGGATATGTAAGATTATTCCGCCATTACCCAAGCCTTCTAAAAGATATGTCTTTTCTAATTTAAACAAGTCTCTTTTGAAGAGCCCGGAATTGGCTTCAGATAGTAATTCAGTTGGAGTTAGTAATTCTTTGAAAATTTCTTCTGGGGATAGTGGTAGTGATGGGGAGGCTCGGGCTGTGTTTACCACAAGGCATCAAGAACTGGGGCAGAATATTAAAAGAAACAAAGGACCAATTCAAAGTCCACTTTCCGGTGTTCATAAGCAAGTATGGCAGAGTGGGGAAATTTATACACTTGAACAGTTTGAGTCTAAATCAAAGGCTTTTGCAAGAAGTGTACTAGGTATGGTTAAGGAGGTTTCTCCCCTGGTCATAGAGGCTATGTTTTGGAAGGCAGCTTCGGAGAAGCCTATATATGTGGAGTATGCCAATGATATGCCTGGGTCTGCTTTTGGAGAATCCAAGGGTCAGTTTCATTATATTCATAGAAGGAGAAGGAGAAAGGCTTATTATCAAAGGAGTCTAGATACCTCAGATAGCCAAGAACCCAAAATGGATAAAATAATAGATACCAAGACGGGTGAAAGTAAAGCTGCTTCTGCCCATAATCATGCAGACACTTGCTCACAGGCATCAAATTCAACTTCAAACCAGTCAACATTTTCGTCAAATGAAGCCCCACATTCTATTAGGCAGAAGAGTTCAGATTCCAGCAATGAGATGGAAGGTACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAACTTACAAGTTATTTCACGTTCACAGGGCTCGCTAACTCGTTTCATGCCAGATGATATTCCTGGTGTTACTTCCCCCATGGTATACATTGGTATGCTGTTCAGTTGGTTTGCATGGCATGTAGAGGATCATGAACTTCATAGCATGAATTTTCTTCACATTGGCTCATCAAAGACTTGGTATGCTGTTCCTGGAGATTATGCCTTTGCTTTTGAGGAACTCATCCGCACTGAGGCTTATGGTGGTGATATGGATCACTTAGCTGCTCTGACTCTGTTGGGGGAGAAGACGACCCTTATATCACCGGAGGCAGTTGTTGCATCTGGGATCCCTTGTTGCAAGTTGACGCAGAACCCTGGAGAATTTGTTGTGACCTTCCCAAGGGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGAACTCCACAATGGCTCACAGTGGCCAAGGAAGCTGCAGTGCGTAGGGCTGCAATGAATTATCTTCCCATGCTTTCCCATCAGCAACTGCTTTACTTATTGACTATGTCTTTTGTTTCAAGAGTGCCAAGAACATTATTACCGGGTGTGCGGAGTTCCCGTCTGAGAGACCGTCAAAAAGAAGAAAGAGAATTGTTAGTAAAAAGATCTTTTATAGAAGATATGCTGCAAGAAAACAACCTGCTATCCATTCTTGGAAAGCAATCAACTTGTCATGCTGTTTTATGGAATGCCGATTTACTCCCAGATTCGAGCAAGGATTCTCCGCAGTTGCCTGACTTTACTTCTACAACTAGAACCTCTATGGCAGAAAATGTGTCAAATTTGAGTCCTGCAGATAAGAGCAACCACAGTTGTCTGCTTGATGAAATGAGCTTGTATATGGAGAATCTGACTGAACTTTATCTGGGTGACGACAGTCTTCCATGTCACTTCCAAACTGATTCAGGAGCATTGGCTTGTGTGGGTTGTGGGATTCTTGGTTTTCCATTCATGACTGTGGTACAACCATCGGAGAGATCAGCGATGGAACTTTTCCCAGTCTCAGGGAATGCTCTCTCTGTTACTGATCCACCTTCAACAAATGAACCATCAAAACTATCATTAATGAACCGTGACAAGGGTTGGAACACCTCTTGCAAATTTTTGAGGCCACGAATTTTCTGCCTGGACCATGCTGTTCAGATTATGGAGATGCTGCAGTGTAAAGGTGGAGCTAGTGTGCTTGTAATTTGCCATTCAGACTGCCAGAAAATCAAGGCACATGCTAGGACAGTAGCAGAGGAGATAGGCTGTGCTTTTGATTATAAGGAGGTTCCATTAGATACAGCGTCCCCTGAAGATTTGACCTTGATAGATCTTGCGATTGATGGTGAAGAACACAATGAATGTGAAGAAGACTGGACATCTAAATTAGGAATTAACCTGCGACATTGTGTCAGTGCAAGAAAGAACTCTCCATATAAACAAGCTCCTTTCAAATTGGCACTGGGAATGTTGTTCCCTGAAAAATTTCCTGATTCAGATGTCTTATCTGTAAATTGGCAGTCAAAGAGATTTCGCTCCAGAAGGTTGAAGTATTTGGCTCAGGCGAAACCATGTGATGGGATTCAGAGAAAGAAGGGCGATCAGTTGGAAGGAAAGACAGATGGCTCCACTGCAAAAAAGATGCTTCAGTATTCAAGGAGAAAGTTCAGGTCAAAGCAAGGTTGTTTCTCTGAATCAAACATGGTTCATGTACCCCATAAAGAGTCCATAAATGTGCCAGCTGTCTTGAGTAGGGATTCTGGTAACCAGGTTTCTCAAAATGAGCCTGGCACTGAGAATTCTAGGAGTGATTGTGCAGTGTCATGTGTCTTGCAACCTGAAAACCAACTTACTGAAATGACCACTAGTATGAGTTTGAAAGTTGCTTCTTCACAACCTTCAGATTTCACTCTGAAACCCATGTCAGCGGATGAAAATGCGGGACCAGAGGTCCAGAATCAAACTACAAAGGAATTAAAAATCGATGACAAAAGTAATTGCACAACACGTGATCATTCTATGATGCCTTGTAAGATGGGTGCCTCAGAAATTGATAATAAGGACAATGAGCGTTTGCATGACAAGATAACTTCTAGCTCACTGGCTAAAGTAAAAAATGGTGACATGCTTACTGAGAACCTTATCACAGAAGCAATTAACACCAACTATAGCAGTAGTGTGGATTTTAATGGAGTACATCAAGAATTTGAGTCTACCCATAAGAGTAACAAGGTGGAACCTACTTCATCTCCTGTTTCATCGGTAACTCAGCAGACACTTGCTTTCATGGAAGAAAATTCTGATAGTGCTAGAAATAATCATAGCACTGAAAGCATGGGCTATGGTGCATCCTTAAAAGGGAGAACGTGCACTTCTAGTTTGAATGAAAACAACATGGAACTTACTGTAAGTTGTGATAAATCAATAAATGAGCAGACGTCAAAGATTGATGCTCATGAAGTTCCAAAAGAGCTTTGTGTCCTTGCAGACTCCTGTCCTCAATCTACTTCAGATGTGATAAAAGAACTCGAAATCGAGCCAAGAATCATGAATGATGAGGAAATTTGTTCTGGTACTGGTGCTGGGCCATCATTAAAGGACTCTTCTGTGTCAATCCGGGAGTGTTCTGCAACTGAGGGCTTAAATGGAAGTGAAGTTCATTTTTCACAAGACGATAGGGAGCCGCTAAGCTCTGAAAGTTCACCAGGAATTAGGTCCAATACCCAGAAGAAAAGAAACAGGGAATTGGAACAGATACAAGAGATCAATGTAAGTTTCCATGGCTTTGTTAGAAGTCCATGTGAAGGATTAAGACCGAGGGCTTGTAAAAGCTCTGACAGAAGCATGGCTGAAACCATCAATTCTGTGGAGGAAAATCTAGAGGTTAAAAGGGCTAGGAGGAAATCATCAGACGTCGTGTTGTGTTTCGAGAATAAGAAGGATGCTGTCAAGAGGTCTCACAAGTGCGACCTTGATGGTTGCCATATGAGTTTTATGACCAAAGCAGATTTAATGTTGCACAAGCGCAACCGCTGCCCTCTTGATGGGTGTGGAAAGAAGTTCAGATCCCACAAATATGCCGTGCTTCACCAACGTGTCCATGATGATGACAGGCCCCTCAAGTGCCCATGGGAAGGTTGCTCAATGTCATTCAAGTGGGCATGGGCGAGGACTGAGCATATACGGGTGCATACTGGGGAAAAGCCATACCACTGCAAGGTTGAGGGATGTGGCCTTTCGTTCAGATTTGTATCCGATTATAGTAGGCACCGGCGGAAAACGGGGCACTATGTATAG 4212 0.4276 MGNVEIPNWLKGLPLAPEFRPTDTEFADPIAYISKIEKEASAFGICKIIPPLPKPSKRYVFSNLNKSLLKSPELASDSNSVGVSNSLKISSGDSGSDGEARAVFTTRHQELGQNIKRNKGPIQSPLSGVHKQVWQSGEIYTLEQFESKSKAFARSVLGMVKEVSPLVIEAMFWKAASEKPIYVEYANDMPGSAFGESKGQFHYIHRRRRRKAYYQRSLDTSDSQEPKMDKIIDTKTGESKAASAHNHADTCSQASNSTSNQSTFSSNEAPHSIRQKSSDSSNEMEGTAGWKLSNSPWNLQVISRSQGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHIGSSKTWYAVPGDYAFAFEELIRTEAYGGDMDHLAALTLLGEKTTLISPEAVVASGIPCCKLTQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLTVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFVSRVPRTLLPGVRSSRLRDRQKEERELLVKRSFIEDMLQENNLLSILGKQSTCHAVLWNADLLPDSSKDSPQLPDFTSTTRTSMAENVSNLSPADKSNHSCLLDEMSLYMENLTELYLGDDSLPCHFQTDSGALACVGCGILGFPFMTVVQPSERSAMELFPVSGNALSVTDPPSTNEPSKLSLMNRDKGWNTSCKFLRPRIFCLDHAVQIMEMLQCKGGASVLVICHSDCQKIKAHARTVAEEIGCAFDYKEVPLDTASPEDLTLIDLAIDGEEHNECEEDWTSKLGINLRHCVSARKNSPYKQAPFKLALGMLFPEKFPDSDVLSVNWQSKRFRSRRLKYLAQAKPCDGIQRKKGDQLEGKTDGSTAKKMLQYSRRKFRSKQGCFSESNMVHVPHKESINVPAVLSRDSGNQVSQNEPGTENSRSDCAVSCVLQPENQLTEMTTSMSLKVASSQPSDFTLKPMSADENAGPEVQNQTTKELKIDDKSNCTTRDHSMMPCKMGASEIDNKDNERLHDKITSSSLAKVKNGDMLTENLITEAINTNYSSSVDFNGVHQEFESTHKSNKVEPTSSPVSSVTQQTLAFMEENSDSARNNHSTESMGYGASLKGRTCTSSLNENNMELTVSCDKSINEQTSKIDAHEVPKELCVLADSCPQSTSDVIKELEIEPRIMNDEEICSGTGAGPSLKDSSVSIRECSATEGLNGSEVHFSQDDREPLSSESSPGIRSNTQKKRNRELEQIQEINVSFHGFVRSPCEGLRPRACKSSDRSMAETINSVEENLEVKRARRKSSDVVLCFENKKDAVKRSHKCDLDGCHMSFMTKADLMLHKRNRCPLDGCGKKFRSHKYAVLHQRVHDDDRPLKCPWEGCSMSFKWAWARTEHIRVHTGEKPYHCKVEGCGLSFRFVSDYSRHRRKTGHYV 1403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2613 1403 ProSitePatterns Zinc finger C2H2 type domain signature. 1317 1339 IPR013087 -
Lele05g2613 1403 SMART JmjN_1 15 55 IPR003349 -
Lele05g2613 1403 MobiDBLite consensus disorder prediction 236 291 - -
Lele05g2613 1403 PANTHER LYSINE-SPECIFIC DEMETHYLASE 8 1341 - -
Lele05g2613 1403 SMART c2h2final6 1292 1314 IPR013087 -
Lele05g2613 1403 SMART c2h2final6 1315 1339 IPR013087 -
Lele05g2613 1403 SMART c2h2final6 1375 1401 IPR013087 -
Lele05g2613 1403 SMART c2h2final6 1345 1369 IPR013087 -
Lele05g2613 1403 MobiDBLite consensus disorder prediction 1186 1219 - -
Lele05g2613 1403 MobiDBLite consensus disorder prediction 243 291 - -
Lele05g2613 1403 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Lele05g2613 1403 ProSiteProfiles Zinc finger C2H2 type domain profile. 1315 1344 IPR013087 -
Lele05g2613 1403 Gene3D Classic Zinc Finger 1313 1399 - -
Lele05g2613 1403 FunFam Probable lysine-specific demethylase ELF6 1342 1371 - -
Lele05g2613 1403 ProSiteProfiles JmjC domain profile. 291 460 IPR003347 -
Lele05g2613 1403 Pfam JmjC domain, hydroxylase 324 443 IPR003347 -
Lele05g2613 1403 ProSitePatterns Zinc finger C2H2 type domain signature. 1377 1401 IPR013087 -
Lele05g2613 1403 ProSiteProfiles Zinc finger C2H2 type domain profile. 1345 1374 IPR013087 -
Lele05g2613 1403 SMART cupin_9 291 460 IPR003347 -
Lele05g2613 1403 ProSiteProfiles Zinc finger C2H2 type domain profile. 1375 1403 IPR013087 -
Lele05g2613 1403 SUPERFAMILY beta-beta-alpha zinc fingers 1315 1352 IPR036236 -
Lele05g2613 1403 Gene3D Cupin 9 464 - -
Lele05g2613 1403 ProSitePatterns Zinc finger C2H2 type domain signature. 1347 1369 IPR013087 -
Lele05g2613 1403 SUPERFAMILY Clavaminate synthase-like 291 457 - -
Lele05g2613 1403 Pfam jmjN domain 17 50 IPR003349 -
Lele05g2613 1403 SUPERFAMILY beta-beta-alpha zinc fingers 1355 1397 IPR036236 -
Lele05g2613 1403 MobiDBLite consensus disorder prediction 939 961 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2613 Lele-ChrLele05 41962640 41971711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2613 1 860 C2H2 Transcription Factor Family AT5G04240 58.153 0.0 989
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele05g2613 JmjC 5.7e-36 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g2613 05 41962640 41971711 Lele07g2631 07 31800425 31807986 hybridization
Lele05g2613 05 41962640 41971711 Lele08g2534 08 31064667 31072403 hybridization