Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2608 ATGGGTTTAATCAGCAGTATCTTGGGCATTCTCGGTTTCTCCATTGGAATTCCTCTCGGCCTCTTGGTTGGGTTTTTCTTCTTCGTTTACTCTGAACCCAAAGAAGTGAAGGAAACAGAGGTAGTTCCAATTGGGGATTTAGGCCCAAATGCGTTGCAAGAACTTCTTTCCGAAATTCCTGTGTGGATGAAGAGTCCCGATTATGAACGAGTAGACTGGATGAACAAATTTTTATTATACATGTGGCCTTCACTTGATAAGGCAATATGTCGTACGATTGAAAGCATGGCAAAACCAATGTTTAGAGAATATATAGGGATGTGTCAGATTAAAAGTATTGAATTTGAGACTCTAAGCCTTGGTACTCTTCCTCCTACCATATGCGGTATTAAAGTCTTCGAGACAAATGAAAATGAATTGATTATGGAACCAATCATCAAATGGGCTGGCAATCAGAATATAGTGGTGGTTTTGAAGTTGTTATCTCTACGGATCAAGGTTCAGGTGGTAGACTTACAACTATTTGCAGCACCGCGGATAACTTTAAAACCTTTAGTGCCTACATTTCCATGTTTTGCAAACATTGTCGTATCATTGTTGGAGAAGCCTCATGTAGACTTCGGGATGAAAATATCAGGAGGGGACATCATGGCAATTCCTGGTCTTTACAGATATGTTCAGGAAACAATAAAAAAACAAGTTGCAACCCTCTATCTCTGGCCTCAAACTCTTGACATTCCTATTCTTGACGAATCATCGGTGGCAATAAAAAAGCCTGTGGGGATATTACATGTGAATGTGATTAAGGCACTAAAGCTTTTGAAGATGGATTTGTTGGGAACGTCTGATCCATATGTCAAACTCAGCCTTTCTGGGGACAAGCTTCCAGCAAAGAAAACCACCATCAAGAGGAGGAATTTGAATCCTGAGTGGAATGAGAAGTTCAAGCTTGTTGTGAAGGACCCTGATTCTCAAGTTCTCCAATTGCAAGTCTTTGACTGGGATAAGGTTGGGGGACATGACAGGCTTGGGATGCAGTTAATCCCACTTAAGCTGCTAAAGCCTTATGAGAGCAAGGAATTCACACTTGATTTACTCAAAGACACAAATGTGACAGAGCCTCCAAATAAGAAGCCAAGAGGTCAAATTGTGGTGGATCTTACTTTTGCTCCTTTCAGAGAAGAAAGTGGCAAATTTGGTGGGTATGTGGAAAATGGGAATGGTAAAGGATCTGATGATGATGATGTCCAAGGGGCTGGTTTGCTTTCTGTTCTGATACAGCAGGCTGAGGAGGTTGAGGGTAAAAGCCACAACAACCCATACGCACTGGTTTTCTTCAGAGGCGAAAGGAAAAAGACAAAGATCATAAGGAAAACTCGTGACCCGAGGTGGAACGAAGAATTTGAATTTATGCTAGAGGAGGCTCCTCTTCGTGAGAAGATACACATTGAAGTAATGAGTAGGAGGACCGTTTTCAGTTTTCTGCCCAAGGAATCATTGGGGCATGTGGAGATAAACCTGAATGATGTAGTGCACAATGGTCGCATTAATGATAAATTCCATCTCATCAATTCAAGGAATGGTGTCATACATGTTGAGATCAGATGGAAGGTCATTTAA 1620 0.4136 MGLISSILGILGFSIGIPLGLLVGFFFFVYSEPKEVKETEVVPIGDLGPNALQELLSEIPVWMKSPDYERVDWMNKFLLYMWPSLDKAICRTIESMAKPMFREYIGMCQIKSIEFETLSLGTLPPTICGIKVFETNENELIMEPIIKWAGNQNIVVVLKLLSLRIKVQVVDLQLFAAPRITLKPLVPTFPCFANIVVSLLEKPHVDFGMKISGGDIMAIPGLYRYVQETIKKQVATLYLWPQTLDIPILDESSVAIKKPVGILHVNVIKALKLLKMDLLGTSDPYVKLSLSGDKLPAKKTTIKRRNLNPEWNEKFKLVVKDPDSQVLQLQVFDWDKVGGHDRLGMQLIPLKLLKPYESKEFTLDLLKDTNVTEPPNKKPRGQIVVDLTFAPFREESGKFGGYVENGNGKGSDDDDVQGAGLLSVLIQQAEEVEGKSHNNPYALVFFRGERKKTKIIRKTRDPRWNEEFEFMLEEAPLREKIHIEVMSRRTVFSFLPKESLGHVEINLNDVVHNGRINDKFHLINSRNGVIHVEIRWKVI 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2608 539 Pfam C2 domain 261 359 IPR000008 -
Lele05g2608 539 Pfam C2 domain 421 521 IPR000008 -
Lele05g2608 539 Gene3D C2 domain 421 539 IPR035892 -
Lele05g2608 539 CDD C2 422 523 - -
Lele05g2608 539 FunFam Extended synaptotagmin-2 421 538 - -
Lele05g2608 539 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 248 IPR039010 -
Lele05g2608 539 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Lele05g2608 539 FunFam Synaptotagmin-2 isoform A 256 409 - -
Lele05g2608 539 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 256 393 IPR035892 -
Lele05g2608 539 CDD C2 263 365 - -
Lele05g2608 539 ProSiteProfiles C2 domain profile. 240 363 IPR000008 -
Lele05g2608 539 SMART C2_3c 262 362 IPR000008 -
Lele05g2608 539 SMART C2_3c 421 519 IPR000008 -
Lele05g2608 539 Gene3D C2 domain 256 400 IPR035892 -
Lele05g2608 539 ProSiteProfiles C2 domain profile. 403 520 IPR000008 -
Lele05g2608 539 PRINTS C2 domain signature 327 335 IPR000008 -
Lele05g2608 539 PRINTS C2 domain signature 278 290 IPR000008 -
Lele05g2608 539 PRINTS C2 domain signature 305 318 IPR000008 -
Lele05g2608 539 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 5 536 IPR045050 GO:0008289
Lele05g2608 539 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 420 536 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2608 Lele-ChrLele05 41916899 41921448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2608 258 518 Lipid Metabolism Gene Families AT3G61300 25.806 1.56e-09 58.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g2608 05 41916899 41921448 Lele07g2627 07 31752299 31756840 hybridization
Lele05g2608 05 41916899 41921448 Lele08g2529 08 31015216 31019803 hybridization