Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2605 ATGATCGGACCAAATTTCATGGATGAGATAGACTGTGGCAGCTTCTTCGACCACATTGACGACCTCCTCGATTTCCCAGCCGAAGATGTCGACGCGGCCTCCTTGCCCTCCACCGCCGTGAGTTGCAACTCCTTCCCCACCGTCTGGCCCGCTGAGTCCGACTCCTTGCCCGGCTCCGACTCTGTCTTCTCCGCCAACAACGCCTCCGACCTCTCCGCCGAGCTTTCAGTTCCGTATGAAGACATGGTCCAATTGGAATGGCTTTCGAACTTTGTGGAGGACTCGTTCACTGGTGGAAGCCTCACCATGAAGAAAGTGGAGCAATCTTGCGTCACCAACAACGACTCGGCGCACAACCAATTCCAGACTTCAAGCCCGGTCTCTGTCCTCGAGAGCAGCAGCTCCTGCTCCGGGGAGAATCCGGTGGCGCCGCCGGAAATGGTCGTCCCCGTGCCTTGTGGTGGACGTGCACGCAGCAAGCGCTCACGTCCTGCCACATTCAACCCTCATCCCGCTATGCAGATCATTTCCCCTACATCCTCTGTCGGTGAAAACACACAGCGGAATTCAGATTGTGAGAATTTCGTGGAGTCTCATCCGGTGATCAAGATACCGAAGCAATCTTCAGGGGAGCACAAGAAGAAGAAGAAGATCAAATTCACTTGTCCATTAGGCCCTGCTGATGTGAATCAGCAGAATAATAATGGTTCATCACAAGCAGCAGTGAGGAAATGTATGCACTGTGAGATAACAAAGACACCACAATGGAGGGCGGGTCCAATGGGGCCAAAAACACTATGCAATGCTTGTGGGGTTCGCTACAAATCCGGGAGGCTATTCCCGGAATACAGACCGGCGGCTAGTCCGACATTTTGCCCATCGTTACACTCGAATTCCCATAAGAAGGTGCTCGAAATGAGAAGCAAAGAACTAGAAGAAACTGACGCTTCACCAGAGCTCATTCCAAACACTAACAACAGCCTTACGCTGGAATACATGTGA 1002 0.5259 MIGPNFMDEIDCGSFFDHIDDLLDFPAEDVDAASLPSTAVSCNSFPTVWPAESDSLPGSDSVFSANNASDLSAELSVPYEDMVQLEWLSNFVEDSFTGGSLTMKKVEQSCVTNNDSAHNQFQTSSPVSVLESSSSCSGENPVAPPEMVVPVPCGGRARSKRSRPATFNPHPAMQIISPTSSVGENTQRNSDCENFVESHPVIKIPKQSSGEHKKKKKIKFTCPLGPADVNQQNNNGSSQAAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSLHSNSHKKVLEMRSKELEETDASPELIPNTNNSLTLEYM 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2605 333 MobiDBLite consensus disorder prediction 172 188 - -
Lele05g2605 333 ProSitePatterns GATA-type zinc finger domain. 245 270 IPR000679 GO:0006355|GO:0043565
Lele05g2605 333 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 243 302 - -
Lele05g2605 333 Gene3D - 240 289 IPR013088 GO:0006355|GO:0008270
Lele05g2605 333 MobiDBLite consensus disorder prediction 155 188 - -
Lele05g2605 333 MobiDBLite consensus disorder prediction 313 333 - -
Lele05g2605 333 CDD ZnF_GATA 244 291 IPR000679 GO:0006355|GO:0043565
Lele05g2605 333 PANTHER GATA TRANSCRIPTION FACTOR 15 318 - -
Lele05g2605 333 MobiDBLite consensus disorder prediction 318 333 - -
Lele05g2605 333 PIRSF Txn_fac_GATA_plant 2 329 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lele05g2605 333 ProSiteProfiles GATA-type zinc finger domain profile. 239 275 IPR000679 GO:0006355|GO:0043565
Lele05g2605 333 FunFam GATA transcription factor 234 319 - -
Lele05g2605 333 SMART GATA_3 239 289 IPR000679 GO:0006355|GO:0043565
Lele05g2605 333 Pfam GATA zinc finger 245 278 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2605 Lele-ChrLele05 41870762 41871906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2605 1 323 C2C2-Gata Transcription Factor Family AT3G54810 42.398 5.04e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele05g2605 GATA 5.6e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g2605 05 41870762 41871906 Lele07g2625 07 31700191 31701349 hybridization
Lele05g2605 05 41870762 41871906 Lele08g2526 08 30972866 30973987 hybridization