Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2562 ATGGACATTACAGCTGAACTCCATTTTGTTGGGACTTTTTCACTTCTTACAGCAGATCCAGGAATAGCCATGTCGGGAAACACAAGTTGCACTGTTTACAGAGGCAATCTAGATGACAGAGTCGCGGAGAGGATCTTATATGATATATTACTTCAAGCAGGACGAGTGGTGGACCTGTATATTCCTAGAGATAAGGAATCTGAGAAACCTAAAGGATTTGCCTTTGCAGAATACGAGAGTGAGGAGATTGCAGATTATGCTGTCAGTAACTTATTTGTATTTTTTGAATTTGTCATAGCTGACGGGAACCTCAGAAAAGCCTTATTGTCATGTGACATTATACTATTGGCTATAGCTGAATGTATAACACAGTTCCATAGGCTTTCTACTGATCAACAGATATCTGGCCAAGACAAACGTACCCCAAATGGTTCTGCAGTAGCTACACCGTCGTCAAATTCTTCTCACCGATCGAGGCCCCACCCTGTGCCAATAAATAATACAGAAATTTCTCCGCACTCTGCTAGGTTACCAACACCTAGCCGAATTTCAGATAACCCTGTAAATTACTCCCGAGGCGCCACTGGGGCACAGCCATCTCACGACTTAAGAGATCTTCACAAGCAGCAACTCACAGTTGCTGATTAA 648 0.429 MDITAELHFVGTFSLLTADPGIAMSGNTSCTVYRGNLDDRVAERILYDILLQAGRVVDLYIPRDKESEKPKGFAFAEYESEEIADYAVSNLFVFFEFVIADGNLRKALLSCDIILLAIAECITQFHRLSTDQQISGQDKRTPNGSAVATPSSNSSHRSRPHPVPINNTEISPHSARLPTPSRISDNPVNYSRGATGAQPSHDLRDLHKQQLTVAD 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2562 215 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 91 IPR000504 GO:0003723
Lele05g2562 215 MobiDBLite consensus disorder prediction 133 196 - -
Lele05g2562 215 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 24 91 - -
Lele05g2562 215 SMART rrm1_1 31 107 IPR000504 GO:0003723
Lele05g2562 215 Gene3D - 18 94 IPR012677 -
Lele05g2562 215 MobiDBLite consensus disorder prediction 133 215 - -
Lele05g2562 215 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 91 IPR000504 GO:0003723
Lele05g2562 215 SUPERFAMILY RNA-binding domain, RBD 24 90 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2562 Lele-ChrLele05 41364240 41367499 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g2562 05 41364240 41367499 Lele07g2579 07 31166240 31169303 hybridization
Lele05g2562 05 41364240 41367499 Lele08g2482 08 30476717 30478223 hybridization