Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2557 ATGAGGACGATGCATCTTCTTGTGTTTTTATTCTTCTCTGTTACGGCTTCATGCTATATGGCGGGGGCCAAGGTGGTGCTGATTGGGAACAACGTCACTCTATCCTTCGACGACATTGAAGCTAATTTTGCTCCAGCGATGAAAGGTTCTGGAGAATGTGGGGTCTTGTATATTGCAGAGCCGGTTGATGCTTGTACAGAACTGACAAATAATGTTGAACCGCTTTCAAATACAAGTTCTCCTTTTGTTTTAATAATTAGAGGGGGGTGTAGCTTTGAAGAGAAAGTCAGAAGAGCACAAAAGGCTGGCTTCAAAGCGGCAATTGTATATGACGATGAAGACGATGGTCCTTTAGTTTCAATGGCAGGAAATTCGGGCGGTATAAAAATACATGCAGTATTTGTATCTAAAGCCTCAGGTGAAACACTGAAAAGATACGCTGGACAGACAAACATTGAAATGTGGCTAATTCCAAGTTTTGAAAACTCAGCATGGTCTATCATGGCAATTTCATTCATTTCCCTACTAGCAATGTCAGCAGTACTGGCTACTTGTTTCTTTGTCCGAAGGCATCGTATACGAAGGGAAAGGCCTCAAGCTTCTCGTGTTCGTGAGTTCCATGGGATGAGCAGTCGCCTAGTGAAAGCAATGCCTAGTTTGATATTTACTGCTGTTTTAGAGGATAATTGTACATCAATGACATGTGCAATATGCCTTGAGGACTATTGTGTTGGAGATAAGCTCAGGATTCTGCCCTGCTGTCACAAGTTTCATGCTGCTTGCGTGGATTCTTGGCTTACTTCATGGAGAACCTTTTGTCCAGTTTGTAAGCGTGATGCAAGGACTGGTCTACCTGACCCTCCACCTTCAGAATCCACGCCTTTGCTTTCATCTGGCCCAGCATCTGCAGCATCCTCTATAGCCTCATCTGTGAGATCTTCATTAGCGTCATCTTCTGCAATACAAATTGGTCGGGCATCATCACGGTCCCCATCTGTTTCTCGGGGCCATTCTTTGGCTAGTACTCCCTACATTCAGCCATCATTTAGGTCCCATCGCCAATCTCCCTTCATGAGTGTCAGTCGAAGCTCAGTAGATCTTAGGAATGCGTCCCAAAGATCTCAAGCTTCTCATTTGAATTCTCCATACCCATCAATGTCATCAATGAACTCAAGATACTTGTCTCCACATATTCGAAGTCCAAGCTATGTTTCAGGAAGTTATATTGGTTCTTCTAGTCATCGTAATCATCCACTTCGTCATAGTGAGTCAGCTGCGAGTTTTTCTCCATTTGCGTCTGCCCAGTCCCTTCCAGAGTGCTGA 1323 0.4414 MRTMHLLVFLFFSVTASCYMAGAKVVLIGNNVTLSFDDIEANFAPAMKGSGECGVLYIAEPVDACTELTNNVEPLSNTSSPFVLIIRGGCSFEEKVRRAQKAGFKAAIVYDDEDDGPLVSMAGNSGGIKIHAVFVSKASGETLKRYAGQTNIEMWLIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPQASRVREFHGMSSRLVKAMPSLIFTAVLEDNCTSMTCAICLEDYCVGDKLRILPCCHKFHAACVDSWLTSWRTFCPVCKRDARTGLPDPPPSESTPLLSSGPASAASSIASSVRSSLASSSAIQIGRASSRSPSVSRGHSLASTPYIQPSFRSHRQSPFMSVSRSSVDLRNASQRSQASHLNSPYPSMSSMNSRYLSPHIRSPSYVSGSYIGSSSHRNHPLRHSESAASFSPFASAQSLPEC 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2557 440 CDD mRING-H2-C3H2C2D_ZSWM2 234 277 - -
Lele05g2557 440 Pfam Ring finger domain 234 277 IPR001841 -
Lele05g2557 440 CDD PA_C_RZF_like 24 164 IPR044744 -
Lele05g2557 440 ProSiteProfiles Zinc finger RING-type profile. 235 277 IPR001841 -
Lele05g2557 440 MobiDBLite consensus disorder prediction 422 440 - -
Lele05g2557 440 MobiDBLite consensus disorder prediction 351 392 - -
Lele05g2557 440 SUPERFAMILY RING/U-box 228 289 - -
Lele05g2557 440 Pfam PA domain 63 143 IPR003137 -
Lele05g2557 440 Gene3D - 21 156 - -
Lele05g2557 440 SUPERFAMILY PA domain 81 152 IPR046450 -
Lele05g2557 440 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 159 292 - -
Lele05g2557 440 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Lele05g2557 440 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 23 157 - -
Lele05g2557 440 SMART ring_2 235 276 IPR001841 -
Lele05g2557 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 282 IPR013083 -
Lele05g2557 440 MobiDBLite consensus disorder prediction 409 440 - -
Lele05g2557 440 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 195 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2557 Lele-ChrLele05 41324997 41330413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2557 22 439 C3H Transcription Factor Family AT1G22670 48.148 4.33e-111 332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g2557 05 41324997 41330413 Lele07g2573 07 31130965 31136374 hybridization
Lele05g2557 05 41324997 41330413 Lele08g2475 08 30438360 30444156 hybridization