Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2527 ATGTCTGCTTCATCTGCATCCGCTGCCGCCGGCGATTACGTTTGGGCTCCTTGTGCCTCCGATTCTCCTCCAAGAATTTCTCTCACACCTGATCAGGTGAATCTCTGCGCCAAAGCGTTGGCCAGCTTTAGGAAGAAGACGCCGGAGATGATTAAGCAAGAGTTCAAACAATTGCAGGAGGAGGCGATGGAAGAGAGTAAGCTGCCGGAAATATGCAGGGTAGCTCTAACTGACAAGTCTTCGTGGGAGAGTGTTTCAGAGTTCATAGCAGCACAAGGTCCATTGCTAGATACTTGTAAGGATTTCTGGGAAATGCATGAAAAATGTCACGATTATTATCAAGCTGAGGATGGACCTTTAAAGTTTGGTGATATCTCTGTTGTTTGTGAAAGGAAGAAAACTGCTGAAAACTCTTTGGTTCTGCGCCATTTGGAGGTTAAGCGTGCAGAGGAAGATCAACCCTTATCTGTTTTGCACATTCACTATACTGCTTGGCCTGACAATGGAGTTCCCAGTGATACGCATGCTGTGCGTGCCATTTTTCAGAGATTGTACCATTTACCACCAAAACATTGCCCAATATTGGTGCATTGCAGGATCCTTGCTGAGGAAAAGTCTGCCTTGAATCTTCATGATACCATATCTGCTTTCAGGTCTCAGCGATATGGAATGGACCAATACAATTTCTGCTATGAAGCCATTGTAGAGGAACTGGATGAACTTAATTGGTGCTCTGGCTCTGTGGAAATTGAAATTATGTCTCCATCATCTGGTAGCGACTGGCTTTGTTTCATGAGGGATCAATTTGTTCTTGCTAAATTGGTGGATAGTCATAAGCTCCATGCTTATAAATTACAATCCCTGATTAAGCTTCATTGGAAGGTTCAAGGGTTGATTTCAGTAGTGCAGCAGTTCAATAACTCCTTTCTTCTTCATTTTCATTCTGAAGAGGACTTAAAATATATGGTTTCACAGGGTTCATGGATGTTACAAGGTTATTTCATTATTCTATTTCCATGGAAGCCAAATTTCACCTTGTCAGATTTTTATTTTCATCACTTTCCCACTTGGGTTCAAATTCATGGATTGGCTTGGAAGTATTACAATGAGGAGACAGCATGTTATATAGGTGAAAGATTAGGAAAGTTCATTTGCTATGGTGAAAGAAGTCATTTAAACTGCTATGGTTTGCGACTTTAA 1200 0.4167 MSASSASAAAGDYVWAPCASDSPPRISLTPDQVNLCAKALASFRKKTPEMIKQEFKQLQEEAMEESKLPEICRVALTDKSSWESVSEFIAAQGPLLDTCKDFWEMHEKCHDYYQAEDGPLKFGDISVVCERKKTAENSLVLRHLEVKRAEEDQPLSVLHIHYTAWPDNGVPSDTHAVRAIFQRLYHLPPKHCPILVHCRILAEEKSALNLHDTISAFRSQRYGMDQYNFCYEAIVEELDELNWCSGSVEIEIMSPSSGSDWLCFMRDQFVLAKLVDSHKLHAYKLQSLIKLHWKVQGLISVVQQFNNSFLLHFHSEEDLKYMVSQGSWMLQGYFIILFPWKPNFTLSDFYFHHFPTWVQIHGLAWKYYNEETACYIGERLGKFICYGERSHLNCYGLRL 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2527 399 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 32 239 IPR029021 -
Lele05g2527 399 Pfam Domain of unknown function (DUF4283) 269 386 IPR025558 -
Lele05g2527 399 SMART ptp_7 156 236 IPR003595 -
Lele05g2527 399 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 81 240 - -
Lele05g2527 399 SMART PTPc_3 50 239 IPR000242 GO:0004725|GO:0006470
Lele05g2527 399 Pfam Protein-tyrosine phosphatase 106 199 IPR000242 GO:0004725|GO:0006470
Lele05g2527 399 Gene3D Protein tyrosine phosphatase superfamily 29 244 IPR029021 -
Lele05g2527 399 ProSiteProfiles PTP type protein phosphatase domain profile. 87 198 IPR000242 GO:0004725|GO:0006470
Lele05g2527 399 PRINTS Protein tyrosine phosphatase signature 208 223 IPR000242 GO:0004725|GO:0006470
Lele05g2527 399 PRINTS Protein tyrosine phosphatase signature 88 108 IPR000242 GO:0004725|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2527 Lele-ChrLele05 41012895 41021808 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2527 31 241 Protein tyrosine phosphatase (PTP) family AT1G71860 40.000 2.70e-56 186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g2527 05 41012895 41021808 Lele05g2527 05 41012895 41021808 ECH
Lele05g2527 05 41012895 41021808 Lele07g2539 07 30772461 30783105 hybridization
Lele05g2527 05 41012895 41021808 Lele08g2444 08 30135962 30140753 hybridization