Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2479 ATGGCAGATATCGATTACCATAGTAAAAAACCAATCGATACTACAACTCCGACGACGACGTCTCTGAAGCTATTTGGCATTAACATTCACAAAGTTTCAGATTCCAATGAGGCTTCCGGCATCGATCACAGGAAATACGAGTGCCAGTATTGCTGTCGTGAGTTTGCGAATTTACAAGCTTTGGGAGGCCATCAAAACGCACACAAGAAAGAAAGACAGATTCTAAAGCGAGCTCAAATGCAAGCAGCTCGTGCCGCTTTTGTTGCCTCACATCATAGTTATCTTCATCATCATAACCCTATCATATTATCTCCACCTGAGATCCTCACAGGATCGCAGCCACAACTACCACCACCGCGGTCTCCGTGGCTACACACTGTGTCAAATAATCCACCATCTTCGGTGTACCATTCTGGGGCATTTGGTTTGTGTGTGAATTCTGGTTTTGCAGGTTTCCATGATCCTTCACCACCCTCATCTATGGCGACATACGATGGTTTTACCGGCAGCGATGGTGGTGAACGAGGCTTCAGTTTGGATTTGCAACTTAGTCTGAATGTCTTTTGGAATTGA 573 0.452 MADIDYHSKKPIDTTTPTTTSLKLFGINIHKVSDSNEASGIDHRKYECQYCCREFANLQALGGHQNAHKKERQILKRAQMQAARAAFVASHHSYLHHHNPIILSPPEILTGSQPQLPPPRSPWLHTVSNNPPSSVYHSGAFGLCVNSGFAGFHDPSPPSSMATYDGFTGSDGGERGFSLDLQLSLNVFWN 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2479 190 Pfam C2H2-type zinc finger 46 71 - -
Lele05g2479 190 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 73 IPR013087 -
Lele05g2479 190 PANTHER ZINC FINGER PROTEIN 5 1 186 IPR044299 GO:0010090
Lele05g2479 190 SUPERFAMILY beta-beta-alpha zinc fingers 42 73 IPR036236 -
Lele05g2479 190 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
Lele05g2479 190 Gene3D Classic Zinc Finger 24 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2479 Lele-ChrLele05 40524956 40525700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2479 19 185 C2H2 Transcription Factor Family AT1G67030 43.367 7.56e-30 107