Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2459 ATGGGTCGCAGAAAATTGGCACTGAAAACCCTGCAGAATAGGAATGCTCGCAGGGCACTGTTCGAGAGGAGGAAGAAGGGTTTATTGAAGAAAGCTTCTGAAATTTCCACTCTCTGTGGAATCGATGCCTGTGTGATCATCTTCCCTCCTCCAGATTCTGAAAACCCTAATAAAGCTGAAACCTTTCCCCAAGATCCCACTCAGGTGATTCGCAATATTCAACAATATGACGCCAAGAAGAATAAAAACCCCGAGAAACAGAGGAAGAACTACGATCTCTGTGAGTTCTTCAGTGATAAGAAGAAGCAGGTTGAAGCTGAGACTTGCAGAGTCCGTGAACAGAGATTGAAGATGACATGTCCAAATCCAACCTCGGATGACAGCTTCGACAACCTGGGAGAGGATCAACTAAGGATGTTTATTGCTGTGCTGGATTCTAAGATTCAAGAGTGTGATCAAACAATTGGGGTTTTGAATGCAAAGAAATCAGAGATGCCTTTGGTTCCAATGGGATTGGATTCCTTGGATGATAATTGTTTGGAGATGAATGCTGCTACTGTAATTCCTCCTCATGATGTTTCAGACGAAACCTACCTGGACCTCGGTTTTATGAAGAACATGAGTGATGAAGCCAACGTTATCTCTGCTCCAATAAAACGAATTTTTGGTGATAATAACCCTGACAGGATGGAATCGTACTCTCTTCAAGCCCAGATTCTTGGGTGTGGTCCAACTTGGGATGACAGTTTCACCAACCTAGGAGAGAATCAGGAGAGGATATTTATTGGTTCAACCTTGGACTCTGAGCTTCAAGAGTGTAGTTATCAAATGATTGACATGTTAAAAACAAAGTCCTCTGATGATCATCGGTGTATGATGAAACCTGTAGTTCCTCTTCAAGATATTTCAAACCAGGGCAAATTGAGTTTCCTGCAGAATACAACAGAAGACAACGACCTTGTCATTGGTCATATGAATCCACTTTTTGATAATAGCCTCATAGATTCTTACTGTCTTCAAGATCAGGCGCTTCATTATGGATTAGACAATATAGATTTAGATATGCTTTTGGGATTTTAG 1080 0.4148 MGRRKLALKTLQNRNARRALFERRKKGLLKKASEISTLCGIDACVIIFPPPDSENPNKAETFPQDPTQVIRNIQQYDAKKNKNPEKQRKNYDLCEFFSDKKKQVEAETCRVREQRLKMTCPNPTSDDSFDNLGEDQLRMFIAVLDSKIQECDQTIGVLNAKKSEMPLVPMGLDSLDDNCLEMNAATVIPPHDVSDETYLDLGFMKNMSDEANVISAPIKRIFGDNNPDRMESYSLQAQILGCGPTWDDSFTNLGENQERIFIGSTLDSELQECSYQMIDMLKTKSSDDHRCMMKPVVPLQDISNQGKLSFLQNTTEDNDLVIGHMNPLFDNSLIDSYCLQDQALHYGLDNIDLDMLLGF 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2459 359 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
Lele05g2459 359 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Lele05g2459 359 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 50 IPR002100 GO:0003677|GO:0046983
Lele05g2459 359 SUPERFAMILY SRF-like 1 55 IPR036879 GO:0003677|GO:0046983
Lele05g2459 359 CDD MADS_SRF_like 2 90 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lele05g2459 359 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele05g2459 359 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele05g2459 359 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 154 - -
Lele05g2459 359 SMART madsneu2 1 65 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2459 Lele-ChrLele05 40335223 40336302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2459 1 150 Type I MADS-box Gene Family AT5G55690 28.947 2.91e-13 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele05g2459 SRF-TF 7.5e-15 No_clan