Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2454 ATGCCTAAATCCCAAACCCTAAGTTCGGTTGACCTCTTCCACAGTGCTCTCCAATCTTTAAACTCGTCGCCTCCCTCTCCGTCAGTCTCTCTCCAGCCACACCACACCCCTCTTCCACCGTCTTTCCCCCAATCCAAAATCATACCCAAAACCCGCTTCTTGGTGGACGCATTCCGCCATGCCGGCGATTACTCTGTTTCCTACTTCCTTTCCCATTTCCACTCTGATCACTACACTGGTCTTCGCTCTAATTGGTCTAAAGGCATTGTTTATTGCTCAAACACTACTGCTCGACTTGTTGTTGAAGTGCTCAGGGTTCCTTCAAAGTTCGTAGTCCCTTTACGGCTCTGTGAGCCGGTTGAGATTGATGGCTGTGAAGTTACTCTTATTGATGCGAATCATTGCCCTGGGGCCGTGCAATTCTTGTTCAAAATTCCGGGTTTTGATGGAAAGTGCGAGTGCTATGTTCACACGGGAGATTTTCGGTTTTCTAAGGCAATGAAGTCAGAGCCTTTACTTGCTGCATATGTGGGTGCGGATGCCGTATTTTTGGACATAACCTATTGTCACCCAAAATTTCAGTTTCCTAGCCAAGAAGAGTCTGTAGACTATATAGTTGATGTAGTAGGGAGGGCTGAAAGTGAAAATGATTGTTCTAATAGAAATGTTTTGTTTCTTGTTGCTTCTTATGTTGTTGGGAAAGAGAAGATTCTGCTTGAACTTGCTCGTAGGTTTAAACGTAAAGTGCATGTGGATGCTAGAAAAATGGAGGTTTTGCAGGTTCTTGGGTACGGAGAAAGCCGAGAGTTTACAGATGATGACTCTCAAACTAATATTCATGTTGTTGGGTGGAATGTGTTGGGTGAGACATGGCCATACTTTAGGCCTAATTTTGTTAGAATGAAGGAGATTATGACTGAGAGAGGGTACTCTAAAGTTGTGGGTTTTGTTCCTACCGGATGGACTTATGAAGTGAAGCGCAATAAATTTACTGTGAAGTCAAAGGATTTGTTTCATATTCACCTTGTACCATATAGTGAGCATTCTAACTATGATGAGCTCAGGGAATATGTGAAGTTTTTGAAACCAAAGCGTGTTGTTCCTACTGTAGGTGTAGATGTTGACAAGACTGACAGTAAACATGTGGAGAGAATTATGAAACATTTTGCTGGGTTACTTGATGAGACAGCCAACAAGCGGGAATTTCTAAAGGGATTTCATCGTACATCTGCTGGAGGGGGCTTAAAGTTTGACAAGGATGATAATGATGGCGTGAAGCCAGGGCAGAACGTGGAGACAGAAGTGACGTTATCCGACAAGGGAGATGACAAGAGTGTTAATCCTGATATTGCGCAAAATTTGTCTTCTGCTCTTGAGGAACCTGACTTGCGGGATCCTGCGTCACTGAAGGATGAGGAAACAGAGAGAATCAGTCAAGAGATGTCTAGTTGTTTGCCTGCATGGGTGACTCAAGAACAAGTTCTAGAGCTTATCACTGATGCAAGGGGCGATGTTGTTGAGGCTGTTTCTAATTTCTATGAACGTGAAGCTGAATTTCATGATCAAGTATTTTCTTGTCGAACCTCTGTTTCTGCATCCACATACTTATCAAATGACAGTGATTTGCTTTCAAAACAACCCGTTGTTAGTAGTAAAACTTGCATGAGTGTTGACGTTTCACCGAGTCAAGACTTTAAGTTGTCCACCCCGAGAAATTCACTGGCAAGTAGCATTTCTCCTGCTAAAAGGAAGAGAAATAGTGAAAGAAAGCTGAAAAAGAAAGTAAAAGTCCATAGAAAATCAGAATCAAGTGGGCCAAAACAGTCCAGGATAACAAAATTCTTCACTAAAGTCTTGCCTGACACCACCCAATCTGGTAATTTTGAAGCTGGTTCTGATCAAAGCCCTAAAGTTGAAGACTTGCGACAGTTAGATGTTGAAAAAGTATACAAGGATGAGATCAACCAGTTCATGCGGATAATAAATGGCAATGAATCATTAAAAAATTATGCTATCGCAATAATTGAGAAGACAAAAGGAGATGTAAATAAGGCATTGGATATATATTACTGTAATCCTGCCAATTTTGATGAGAATGAAAAATCAGTTCAAGTTGAGTGCAAACTGGACAACTCTTCAGAAAAGAAATGTGTGTCGCGGGAATTGAGATCTGTGCAAAGTATATCAAGAGAGAATGTAGATGCAACTCTTGTATCCCTACCACCTAAAGAATACAAGCCTAAAGAACATGCGTGTTGGATAGATGGAGAGTCTGCTCCATATTTACATCTTGCACGAACCTTTAATCTTCTTGAGGATGAGAAAGGGAAGATAAAGGCTACTTCAATGTTATGCAACATGTTCAGAAGTTTGTTGGCCTTGTCTCCTGCTGATGTACTTCCTGCTGTATATCTATGCACAAACAAAATTGCTGCAGGCCATGAAAATAAGGAATTAAATATTGGTGGAACTCTGATTACTTCAGCGCTGGAAGAGGCATGTGGAACGACTCGATTGAAAATAAAGGAGATGTATAACAAATTTGGCGACCTTGGTGATGTTGCTCAAGAGTGTCGACAAACACAGAGATTGCTTGCTCCTCCTAGACCACTTCTGATTAAAGATGTTTTCTTAGCACTCCACAAGATAAGCTTACAAACAGGCAATGGAAGCACTCTTCGGAAGAAAAGCATAATTGTAAATCTCATGTGCTCTTGTCGGGAGAAGGAGATAAAGTTTCTTGTTCGTACTTTGGTCAGGAATTTACGGATTGGTGCAATGATTAGAACTGTTTTGCCTGCTCTGGCTCAAGCAGTCGTTATGCACTCATGCCCTACTTTATGCCAAGATGGAACTGCAGAAAATTTGAAGGAGAAGCTTCAGGGCATTTCGGCAGAAATCGTTGAAGCATATAACGTACTCCCAAATTTGGATCTTCTAATACCATCTCTAATGAACAAAGGCACTAATTTTTGTGCTTCAAGTTTGTCAATGGTTCCAGGAATACCTATCAAGCCTATGCTTGCGAAGATCACCAATGGCATCCCCCAAGTTCTGAAGTTATTTCAAAATAAAGCATTTACTTGTGAATATAAATATGATGGTCAGCGGGCCCAGATTCACAAATTAAGTGATGGATCGATTCGTGTTTTCTCAAGAAATGGAGATGAAACAACATCAAGATTTCCAGATTTGATTGACATAATCAAGGAATTCTGCAAGCCTGCTTCAGTGACTTTTATACTGGATGCAGAAATTGTGGGTCTTGATAGGAAGAATGGATATAGGTATATGGCTTTCCAAGAGTTATCTTCACGTGGGAGAGGAAGTAAAGATACTTCAGTTACTACAGAGAGCATAAAGGTGGACATTTGCCTGTTTGTCTTTGATGTCATGTTTGCTAATGGACAACAGCTTTTGGGGTTTCCTCTCCGTGAAAGGCAAAAATATCTGAAGGATTTGTTCTTTGACGAGAAACTTGGCTATTTTGAATATGCAAAGGAAACAACAATTGAAGCAGATGATGCTTCATTAACCTGTGAAGCCACAGTAAGTAAGATAAACTGTTTCCTAGAAGGCGCAATCAATTCGTCATGTGAAGGAATTATGGTGAAATCGTTGGATGTTGATGCTGGATATTCTCCATCAAAGCGTACAGACACATGGTTAAAGGTGAAGCGAGATTATGTGGATGGTTTAAAGGATTCTCTTGATTTAGTACCAATTGGAGGATGGTATGGAAATGGAAGGAAGGCTGGATGGTATAGCCCATTTCTCATGGCATGTTACAATCCCGAAACAGAGGAGTACCAAAGCGTATGCCGTGTGATGTCTGGTTTCTCAGATGTCTTCTACATAGAGATGAAAGAATTCTTTTCTGAGGACAAAATATTGTCAAAAAAGCTGCCGTATTACCGAACAGCTGAGGTACCGGACCTGTGGTTCAGTCCACTACTTGTTTGGGAAATAAGAGGTGCTGAACTTACAGTATCTCCAGTTCACCAAGCTGCCATTGGTCTGGTTCATCCGTCTCGTGGTATCTCAATCAGATTCCCCAGATTTGTTCGCAATGTGTTGGACAGGAACCCAGAAGAATGCAGCACAGCTGCTGATATAGCCGAAATGTTTCATTCTCAGACCCGGAAGATGGATGTTGCACCTGCAGATTGA 4170 0.4132 MPKSQTLSSVDLFHSALQSLNSSPPSPSVSLQPHHTPLPPSFPQSKIIPKTRFLVDAFRHAGDYSVSYFLSHFHSDHYTGLRSNWSKGIVYCSNTTARLVVEVLRVPSKFVVPLRLCEPVEIDGCEVTLIDANHCPGAVQFLFKIPGFDGKCECYVHTGDFRFSKAMKSEPLLAAYVGADAVFLDITYCHPKFQFPSQEESVDYIVDVVGRAESENDCSNRNVLFLVASYVVGKEKILLELARRFKRKVHVDARKMEVLQVLGYGESREFTDDDSQTNIHVVGWNVLGETWPYFRPNFVRMKEIMTERGYSKVVGFVPTGWTYEVKRNKFTVKSKDLFHIHLVPYSEHSNYDELREYVKFLKPKRVVPTVGVDVDKTDSKHVERIMKHFAGLLDETANKREFLKGFHRTSAGGGLKFDKDDNDGVKPGQNVETEVTLSDKGDDKSVNPDIAQNLSSALEEPDLRDPASLKDEETERISQEMSSCLPAWVTQEQVLELITDARGDVVEAVSNFYEREAEFHDQVFSCRTSVSASTYLSNDSDLLSKQPVVSSKTCMSVDVSPSQDFKLSTPRNSLASSISPAKRKRNSERKLKKKVKVHRKSESSGPKQSRITKFFTKVLPDTTQSGNFEAGSDQSPKVEDLRQLDVEKVYKDEINQFMRIINGNESLKNYAIAIIEKTKGDVNKALDIYYCNPANFDENEKSVQVECKLDNSSEKKCVSRELRSVQSISRENVDATLVSLPPKEYKPKEHACWIDGESAPYLHLARTFNLLEDEKGKIKATSMLCNMFRSLLALSPADVLPAVYLCTNKIAAGHENKELNIGGTLITSALEEACGTTRLKIKEMYNKFGDLGDVAQECRQTQRLLAPPRPLLIKDVFLALHKISLQTGNGSTLRKKSIIVNLMCSCREKEIKFLVRTLVRNLRIGAMIRTVLPALAQAVVMHSCPTLCQDGTAENLKEKLQGISAEIVEAYNVLPNLDLLIPSLMNKGTNFCASSLSMVPGIPIKPMLAKITNGIPQVLKLFQNKAFTCEYKYDGQRAQIHKLSDGSIRVFSRNGDETTSRFPDLIDIIKEFCKPASVTFILDAEIVGLDRKNGYRYMAFQELSSRGRGSKDTSVTTESIKVDICLFVFDVMFANGQQLLGFPLRERQKYLKDLFFDEKLGYFEYAKETTIEADDASLTCEATVSKINCFLEGAINSSCEGIMVKSLDVDAGYSPSKRTDTWLKVKRDYVDGLKDSLDLVPIGGWYGNGRKAGWYSPFLMACYNPETEEYQSVCRVMSGFSDVFYIEMKEFFSEDKILSKKLPYYRTAEVPDLWFSPLLVWEIRGAELTVSPVHQAAIGLVHPSRGISIRFPRFVRNVLDRNPEECSTAADIAEMFHSQTRKMDVAPAD 1389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2454 1389 Gene3D - 739 1008 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lele05g2454 1389 MobiDBLite consensus disorder prediction 561 608 - -
Lele05g2454 1389 FunFam DNA ligase 194 348 - -
Lele05g2454 1389 Gene3D - 48 370 IPR036866 -
Lele05g2454 1389 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 739 988 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lele05g2454 1389 FunFam DNA ligase 1035 1166 - -
Lele05g2454 1389 Pfam DNA ligase N terminus 760 936 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lele05g2454 1389 MobiDBLite consensus disorder prediction 457 476 - -
Lele05g2454 1389 Pfam ATP dependent DNA ligase C terminal region 1252 1356 IPR012309 GO:0003910|GO:0006281|GO:0006310
Lele05g2454 1389 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 818 1376 IPR000977 GO:0003910|GO:0005524|GO:0071897
Lele05g2454 1389 Coils Coil 953 973 - -
Lele05g2454 1389 SUPERFAMILY Metallo-hydrolase/oxidoreductase 51 371 IPR036866 -
Lele05g2454 1389 Pfam ATP dependent DNA ligase domain 1006 1226 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lele05g2454 1389 Gene3D - 1016 1230 - -
Lele05g2454 1389 MobiDBLite consensus disorder prediction 585 600 - -
Lele05g2454 1389 MobiDBLite consensus disorder prediction 561 581 - -
Lele05g2454 1389 ProSiteProfiles ATP-dependent DNA ligase family profile. 1117 1264 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lele05g2454 1389 CDD SNM1A-1C-like_MBL-fold 39 191 - -
Lele05g2454 1389 Gene3D - 194 348 - -
Lele05g2454 1389 CDD Adenylation_DNA_ligase_I_Euk 997 1229 - -
Lele05g2454 1389 Gene3D - 1231 1387 IPR012340 -
Lele05g2454 1389 Pfam DNA repair metallo-beta-lactamase 268 373 IPR011084 -
Lele05g2454 1389 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 281 1381 - -
Lele05g2454 1389 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 1000 1231 - -
Lele05g2454 1389 SUPERFAMILY Nucleic acid-binding proteins 1235 1379 IPR012340 -
Lele05g2454 1389 FunFam DNA ligase 1231 1388 - -
Lele05g2454 1389 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1030 1038 IPR016059 GO:0003909
Lele05g2454 1389 CDD OBF_DNA_ligase_I 1235 1378 - -
Lele05g2454 1389 Gene3D DNA ligase/mRNA capping enzyme 1035 1166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2454 Lele-ChrLele05 40207657 40220052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2454 737 1379 Core DNA Replication Machinery Family AT1G08130 39.198 4.56e-164 510